Job Description P39353 Confidence 100.00% Date Thu Jan 5 11:59:42 GMT 2012 Rank 1 Aligned Residues 341 % Identity 20% Template c3oqbF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110 Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.									.	.	20	.	.	.	.	.	.	.	.	.	30										.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.				.	.															.
Query SS confidence																		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.				.	.															.
Query Sequence		I	N	Y	G	V	V	G	V	G	Y	F	G	A	E	L	A	.	.	.	.	.	.	.	.	R	F	M	N	M	H	D	N	A	K	I	T	C	.	.	.	.	.	.	.	.	.	V	Y	D	.	.	P	E	N	G	E	N	I	A	R	E	L	Q	C	I	.	N	M	S	S	L	D	A	L	V	S	S	K	L	V
Query Conservation																		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.				.	.															.
Alig confidence																		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.				.	.															.
Template Conservation
Template Sequence		Q	R	L	G	L	I	X	N	G	V	T	G	R	X	G	L	N	Q	H	L	I	R	S	I	V	A	I	R	D	Q	G	G	V	R	L	K	N	G	D	R	I	X	P	D	P	I	L	V	G	R	S	A	E	K	V	E	A	L	A	K	R	F	N	I	A	R	W	T	T	D	L	D	A	A	L	A	D	K	N	D
Template Known Secondary structure										S	T	T	S						T	T	T	T	T	T								T	S				T	T	S												S													T						S									T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	V	I	V	A	T	P	N	Y	L	H	K	E	P	V	I	K	A	A	K	N	K	K	H	V	F	C	E	K	P	I	A	L	S	Y	E	D	C	V	D	M	V	K	A	C	K	E	A	G	V	T	F	M	A	G	H	I	M	N	F	F	N	G	V	Q	Y	A	R	K	L	I	K	E	G	V	I	G	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	X	F	F	D	A	A	T	T	Q	A	R	P	G	L	L	T	Q	A	I	N	A	G	K	H	V	Y	C	E	K	P	I	A	T	N	F	E	E	A	L	E	V	V	K	L	A	N	S	K	G	V	K	H	G	T	V	Q	D	K	L	F	L	P	G	L	K	K	I	A	F	L	R	D	S	G	F	F	G	R	I
Template Known Secondary structure								S		T	T	T										T	T	T							S		S		S	S															T								G	G	G	G	S												T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.																		.																																.	.	.	.	.	.
Query SS confidence															.	.	.	.	.																		.																																.	.	.	.	.	.
Query Sequence		L	S	C	H	T	K	R	N	G	W	E	N	K	.	.	.	.	.	Q	E	R	L	S	W	K	K	M	K	E	Q	S	G	G	H	L	.	Y	H	H	I	H	E	L	D	C	V	Q	H	L	L	G	E	I	P	E	T	V	T	M	I	G	G	N	L	A	H	S	.	.	.	.	.	.	G	P	G	F	G	N	E
Query Conservation															.	.	.	.	.																		.																																.	.	.	.	.	.
Alig confidence															.	.	.	.	.																		.																.																.	.	.	.	.	.
Template Conservation																																																					.
Template Sequence		L	S	V	R	G	E	F	G	Y	W	V	F	E	G	G	W	Q	E	A	Q	R	P	S	W	N	Y	R	D	E	D	G	G	G	I	I	L	D	X	V	C	H	W	R	Y	V	L	D	N	L	F	G	.	N	V	Q	S	V	V	C	I	G	N	T	D	I	P	E	R	F	D	E	Q	G	K	K	Y	K	A	T	A
Template Known Secondary structure															S	S	S	S			S	S		G	G	G	G		G	G	G	T																			T		.														S					T	T	S							S
Template Predicted Secondary structure																																																					.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		D	D	M	L	F	M	T	L	E	F	P	S	G	K	L	A	T	L	E	W	G	S	A	F	N	W	P	E	H	.	.	.	Y	V	I	I	N	G	T	K	G	S	I	K	I	D	M	Q	E	T	A	G	S	L	R	I	G	G	Q	T	K	H	F	L	V	H	E	T	Q	E	E	D	D	D	R	R	K	G	N	M
Query Conservation																															.	.	.
Alig confidence																															.	.	.
Template Conservation
Template Sequence		D	D	S	A	Y	A	T	F	Q	L	E	G	G	V	I	A	H	I	N	X	S	W	V	T	R	V	Y	R	D	D	L	V	T	F	Q	V	D	G	T	H	G	S	A	V	A	G	L	S	D	C	X	I	Q	A	R	Q	A	T	P	R	P	V	W	N	P	K	R	L	H	D	F	Y	G	D	W	Q	K	L	P	D
Template Known Secondary structure												T	T	T									S	S					S	S	S	S								S	S							S	S							G	G	G														G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	E	M	D	G	A	I	A	Y	G	H	P	G	K	K	T	P	L	W	L	A	S	L	I	R	K	E	T	L	F	L	H	N	I	L	C	G	A	K	P	E	E	D	Y	I	D	L	L	N	G	E	A	A	M	S	A	I	A	T	A	D	A	A	T	L	S	R	S	Q	D	R	K	V	K	I	S	E	I
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		N	V	S	Y	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	K	E	Q	W	E	X	F	I	R	H	V	Y	E	D	A	P	Y	.	.	.	.	.	.	K	F	T	L	L	E	G	A	K	G	V	Q	L	A	E	C	A	L	K	S	W	K	E	R	R	W	I	D	V	A	P	I
Template Known Secondary structure			S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.			S																					T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		326	.	.	.	330	.																	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350							.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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