 |
Job Description | P39353 | Confidence | 97.28% | Date | Thu Jan 5 11:59:42 GMT 2012 |
Rank | 228 | Aligned Residues | 120 |
% Identity | 21% | Template | c3ojlA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:cap5o; |
PDBTitle: native structure of the udp-n-acetyl-mannosamine dehydrogenase cap5o2 from staphylococcus aureus
|
Resolution | 2.80 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 60 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | Y | G | V | V | G | V | G | Y | F | G | A | E | L | A | R | F | M | N | M | H | D | N | A | K | I | T | C | V | Y | . |
D | P | E | N | G | E | N | I | A | R | E | L | Q | C | I | N | M | S | S | L | D | A | L | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | S | K | L | V | D | C | V | I | V | A | T |
Query Conservation |   |
|
|
|
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   | . |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|
|   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|
|   |   | . |
|   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |
|   |   |
|   |   |
|
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|   |
|
Template Sequence |   |
K | L | T | V | V | G | L | G | Y | I | G | L | P | T | S | I | M | F | A | K | H | . |
G | V | D | V | L | G | V | D | I | N | Q | Q | T | I | D | K | L | Q | N | G | Q | I | S | I | E | E | P | G | L | Q | E | V | Y | E | E | V | L | S | S | G | K | L | K | V | S | T | T | P | E | A | S | D | V | F | I | I | A | V |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S | T | T |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  | T | T |
|
| S | S |
|
| T | T |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  | S | S |
|
|
|
| S |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
69 | 70 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 80 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | N | Y | L | H | . |
. |
. |
. |
. |
. |
. |
. |
K | E | P | V | I | K | A | A | K | . |
. |
. |
. |
. |
. |
. |
N | K | K | H | V | F | C | E | K | P | I | A | L | S | Y | E | D | C | V | D | M | V | K | A | C | K | E | A | G | V | T | F | M | A | G | H | I | M | N | F | F | N |
Query Conservation |   |
|   |   |   |
| . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   | . | . | . | . | . | . | . |   |
|
|
|
|   |   |
|
|
|   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |   |
|
|
|   |
|
|
|
|   | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
P | T | P | N | N | D | D | Q | Y | R | S | C | D | I | S | L | V | M | R | A | L | D | S | I | L | P | F | L | K | K | G | N | T | I | I | V | E | S | T | I | A | P | K | T | M | D | . |
D | F | V | K | P | V | I | E | N | L | G | F | T | I | G | E | D | I | Y | L | V | H | C | P |
Template Known Secondary structure |   |
|
|
| B |
| S | S | T | T |
|
| B |
|
|  |  |  |  |  |  |  |  |  |  | G | G | G |
|
| T | T |
|  |  |  |  |
| S |
|
|
| T | T |  |  |  | . |  | T |  |  |  |  |  |  | T | T | T |
|
| B | T | T | T | B |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | |
. | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|