Job Description P39353 Confidence 100.00% Date Thu Jan 5 11:59:42 GMT 2012 Rank 30 Aligned Residues 314 % Identity 20% Template c3ip3D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, putative; PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima Resolution 2.14 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																												.	.								.	.												.	.
Query SS confidence																												.	.								.	.												.	.
Query Sequence		I	N	Y	G	V	V	G	V	G	Y	F	G	A	E	L	A	R	F	M	N	M	H	D	N	A	K	.	.	I	T	C	V	Y	D	P	.	.	E	N	G	E	N	I	A	R	E	L	Q	.	.	C	I	N	M	S	S	L	D	A	L	V	S	S	K	L	V	D	C	V	I	V	A	T	P	N	Y	L	H	K	E
Query Conservation																												.	.								.	.												.	.
Alig confidence																												.	.								.	.												.	.
Template Conservation
Template Sequence		L	K	I	C	V	I	G	S	S	G	H	F	R	Y	A	L	E	G	L	D	E	E	C	S	I	T	G	I	A	P	G	V	P	E	E	D	L	S	K	L	E	K	A	I	S	E	X	N	I	K	P	K	K	Y	N	N	W	W	E	X	L	E	K	E	K	P	D	I	L	V	I	N	T	V	F	S	L	N	G	K
Template Known Secondary structure									S	S	S		T					T	T			T	T									S	S	T	T												T	T	T							S												S						S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		P	V	I	K	A	A	K	N	K	K	H	V	F	C	E	K	P	I	A	L	S	Y	E	D	C	V	D	M	V	K	A	C	K	E	A	G	.	.	V	T	F	M	A	G	H	I	M	N	F	F	N	G	V	Q	Y	A	R	K	L	I	K	E	G	V	I	G	E	I	L	S	C	H	T	K	R	N	G	W	E	N
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		I	L	L	E	A	L	E	R	K	I	H	A	F	V	E	K	P	I	A	T	T	F	E	D	L	E	K	I	R	S	V	Y	Q	K	V	R	N	E	V	F	F	T	A	X	F	G	I	R	Y	R	P	H	F	L	T	A	K	K	L	V	S	E	G	A	V	G	E	I	R	L	V	N	T	Q	K	S	Y	K	L	G
Template Known Secondary structure									T	T							S	S	S		S	S															T	T	T								G	G	G	G	S												T	T	T	T		S										B	B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	E	R	L	S	W	K	K	M	K	E	Q	S	G	G	H	L	Y	H	H	I	H	E	L	D	C	V	Q	H	L	L	G	E	I	P	E	T	V	T	M	I	G	G	N	L	A	H	S	G	P	G	F	G	N	E	D	D	M	L	F	M	T	L	E	F	P	S	G	K	L	A	T	L	E	W	G	S	A	F
Query Conservation
Alig confidence			.																																													.	.
Template Conservation			.																																													.	.
Template Sequence		Q	.	R	P	D	F	Y	K	K	R	E	T	Y	G	G	T	I	P	W	V	G	I	H	A	I	D	W	I	H	W	I	T	G	K	K	F	L	S	V	Y	A	T	H	S	R	L	.	.	H	N	S	G	H	G	E	L	E	T	T	A	L	C	H	F	T	L	E	N	E	V	F	A	S	L	S	I	D	Y	L	R
Template Known Secondary structure			.			G	G	G	G	S											T	T																									S	.	.	S		T	T		T	T			S									G	G	G									S	B
Template Predicted Secondary structure			.																																													.	.
Template SS confidence
		162		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		234	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		N	W	P	E	H	.	.	.	.	.	Y	V	I	I	N	G	T	K	G	S	I	K	I	D	M	Q	E	T	A	G	S	L	R	I	G	G	Q	T	K	H	F	L	V	H	E	T	Q	E	E	D	D	D	R	R	K	G	N	M	T	S	E	M	D	G	A	I	A	Y	G	H	P	G	K	K	T	P	L	W	L	A
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	G	A	P	T	H	D	D	D	R	X	R	I	V	G	T	R	G	I	V	E	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	R	V	F	L	T	D	E	K	G	H	R	E	V	P	L	V
Template Known Secondary structure			T	T	S	S	S	S	B									S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.																																							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	I	R	K	E	T	L	F	L	H	N	I	L	C	G	A	K	P	E	E	D	Y	I	D	L	L	N	G	E	A	A	M	S	A	I	A	T	A	D	A	A	T	L	S	R	S	Q	D	R	K	V	K	I
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		E	K	G	Q	I	F	E	D	F	L	R	E	I	R	G	Q	G	K	C	.	.	.	.	.	.	X	V	T	P	E	D	S	I	L	T	T	E	I	A	L	K	A	R	L	S	A	D	T	G	Q	I	V	L	I
Template Known Secondary structure															T	T	S	S			.	.	.	.	.	.	S	S																						T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.							300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions