Job Description P39353 Confidence 99.15% Date Thu Jan 5 11:59:42 GMT 2012 Rank 78 Aligned Residues 173 % Identity 17% Template c3hdjA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable ornithine cyclodeaminase; PDBTitle: the crystal structure of probable ornithine cyclodeaminase from2 bordetella pertussis tohama i Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.														.
Query SS confidence																																		.	.	.	.														.
Query Sequence		N	Y	G	V	V	G	V	G	Y	F	G	A	E	L	A	R	F	M	N	M	H	D	N	A	K	I	T	C	V	Y	D	P	.	.	.	.	E	N	G	E	N	I	A	R	E	L	Q	C	I	.	N	M	S	S	L	D	A	L	V	S	S	K	L	V	D	C	V	I	V	A	T	P	N	Y	L	H	K	E	P	V
Query Conservation																																		.	.	.	.														.
Alig confidence																																		.	.	.	.														.												.	.															.
Template Conservation																																																															.	.															.
Template Sequence		V	L	G	L	F	G	A	G	T	Q	G	A	E	H	A	A	Q	L	S	A	R	F	A	L	E	A	I	L	V	H	D	P	Y	A	S	P	E	I	L	E	R	I	G	R	R	C	G	V	P	A	R	X	A	A	P	A	D	I	A	A	Q	.	.	A	D	I	V	V	T	A	T	R	S	T	T	P	L	.	F	A
Template Known Secondary structure									S														S										T	T														T	S														.	.		S									S	S		S	.	S
Template Predicted Secondary structure																																																															.	.															.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		I	K	A	A	K	N	K	K	H	V	F	C	E	K	P	I	A	L	S	Y	E	D	C	.	V	D	M	V	K	A	C	K	E	A	G	V	T	F	M	A	G	H	I	M	N	F	F	N	G	V	Q	Y	A	R	K	L	I	K	E	G	V	I	G	E	I	L	S	C	H	T	K	R	N	G	W	E	N	K	Q	E
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		G	Q	A	L	R	A	G	A	F	V	G	A	I	G	S	S	L	P	H	T	R	E	L	D	D	E	A	L	R	R	A	R	A	V	V	V	E	W	R	E	Q	T	L	S	E	A	G	D	L	V	L	A	A	P	D	T	G	L	D	A	K	V	V	E	L	A	D	V	L	A	G	R	A	A	A	R	Q	A	D	E
Template Known Secondary structure		G	G	G			T	T									S	S	T	T													S					S																	G	G	G														T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	S	W	K	K	M	K	E	Q	S	G	G	H	L	Y	H	H	I	H	E	L	D	C	V	Q	H	L	L
Query Conservation
Alig confidence								.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.
Template Sequence		D	I	V	I	Y	K	.	.	.	.	.	.	.	S	V	G	V	G	L	E	D	V	A	L	A	G	Y	A	Y
Template Known Secondary structure								.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions