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Job DescriptionP39353
Confidence100.00%DateThu Jan 5 11:59:42 GMT 2012
Rank11Aligned Residues352
% Identity19%Templatec3btuD_
PDB info PDB header:transcriptionChain: D: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k]
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2....... 10.........20... ......30.... .....40....... ..50.........60.........70.
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Query Sequence  INYGVVGV. . . . GYFGAELARFMNMH. DNAKITCVYDP. . ENGENIARELQCI. . . NMSSLDALVSSKLVDCVIVATPNY
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Template Sequence  IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA
Template Known Secondary structure  S

SSSSSGGGTTTTT
SSTT
TT

SS
SS
S
S
GG
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   18.20.........30.........40.........50.........60.........70.........80.........90.......
 
   72.......80.... .....90.........100.........110.........120.........130.........140.....
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Query Sequence  LHKEPVIKAAKNK. . . . . . KHVFCEKPIALSYEDCVDMVKACKEAGVTFMAGHIMNFFNGVQYARKLIKEGVIGEILSCH
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Template Sequence  SHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELISQGYIGDINSIE
Template Known Secondary structure  GGGG
TT


SS

SST


GGGG
TTTT
S
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   98.100.........110.........120.........130.........140.........150.........160.........170.......
 
   146...150... ......160.........170. ........180.........190.........200....... .
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Query Sequence  TKRNGWEN. . . . KQERLSWKKMKEQSGGHL. YHHIHELDCVQHLLGEIPETVTMIGGNLAHSGPGFG. . . . . . . . . . . . N
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Template Sequence  IAGNGGWYGYERPVKSPKYIYEIGNGVDLVTTTFGHTIDILQYMTSSYFSRINAMVFNNIPEQELIDERGNRLGQRVPKT
Template Known Secondary structure 
SS
SSTTS
GGGGSTTSS
STTTTT






S
SSS


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   178.180.........190.........200.........210.........220.........230.........240.........250.......
 
   209210.........220.........230... ......240.........250.........260.........270.........280...
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Query Sequence  EDDMLFMTLEFPSGKLATLEWGSAF. . . . . NWPEHYVIINGTKGSIKIDMQETAGSLRIGGQTKHFLVHETQEEDDDRRK
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Template Sequence  VPDHLLFQGTLLNGNVPVSCSFKGGKPTKKFTKNLVIDIHGTKGDLKLE. . . . . . . . . . . . . . . . . GDAGFAEISNLVLY
Template Known Secondary structure  S
STTTT
SSS

SSS
SSS
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GGG


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   258.260.........270.........280.........290.........300...... ...310.........320
 
   284.....290.........300.........310.........320.........330.........340.........350.........360...
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Query Sequence  GNMTSEMDGAIAYGHPGKKTPLWLASLIRKETLFLHNILCGAKPEEDYIDLLNGEAAMSAIATADAATLSRSQDRKVKIS
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Template Sequence  YSGTRKEIMKVYHLRNYNAIVGNIHRLYQSISDFHFNTSQFVMQGFDFEGFPTLMDALILHRLIESVYKSNMMGSTLNVS
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TT

TT



S

TT
SSS


TS

G
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   364.....370.
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Query Sequence  EIIKHTSV
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Template Sequence  NIS. HYSL
Template Known Secondary structure  GGG.



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   429430. ....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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