Phyre 2 alignment of P39353 with c2p2sA

Job Description P39353
Confidence 100.00% Date Thu Jan 5 11:59:42 GMT 2012

Rank 34 Aligned Residues 320

% Identity 14% Template c2p2sA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution

Resolution 1.25 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.											.
Query SS confidence																																		.	.											.
Query Sequence	I	N	Y	G	V	V	G	V	G	Y	F	G	A	E	L	A	R	F	M	N	M	H	D	N	A	K	I	T	C	V	Y	D	P	.	.	E	N	G	E	N	I	A	R	E	L	.	Q	C	I	N	M	S	S	L	D	A	L	V	S	S	K	L	V	D	C	V	I	V	A	T	P	N	Y	L	H	K	E	P	V	I
Query Conservation																																		.	.											.
Alig confidence																																		.	.											.
Template Conservation
Template Sequence	I	R	F	A	A	I	G	L	A	H	N	H	I	Y	D	X	C	Q	Q	L	I	D	A	G	A	E	L	A	G	V	F	E	S	D	S	D	N	R	A	K	F	T	S	L	F	P	S	V	P	F	A	A	S	A	E	Q	L	I	T	D	A	S	I	D	L	I	A	C	A	V	I	P	C	D	R	A	E	L	A	L
Template Known Secondary structure									S	S	T												T	T									S		T	T	S								S	T	T			B		S							T		T	T								S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence	K	A	A	K	N	K	K	H	V	F	C	E	K	P	I	A	L	S	Y	E	D	C	V	D	M	V	K	A	C	K	E	A	G	V	T	F	M	A	G	H	I	M	N	F	F	.	N	G	V	Q	Y	A	R	K	L	I	K	E	G	V	I	G	E	I	L	S	C	H	T	K	R	N	G	W	E	N	K	Q	E	R
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence	R	T	L	D	A	G	K	D	F	F	T	A	K	P	P	L	T	T	L	E	Q	L	D	A	V	Q	R	R	V	A	E	T	G	R	K	F	A	V	Y	F	N	E	R	I	N	V	D	S	A	L	F	A	G	E	L	V	Q	R	G	E	I	G	R	V	I	Q	T	X	G	V	G	P	H	R	E	R	G	A	R	P
Template Known Secondary structure					T	T							S	S			S																								T	T	T	T	T													T	T	T	T	S	S											B			S
Template Predicted Secondary structure
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence	L	S	W	K	K	M	K	E	Q	S	G	G	H	L	Y	H	H	I	H	E	L	D	C	V	Q	H	L	L	G	E	I	P	E	T	V	T	M	I	G	G	N	L	A	H	S	G	P	G	F	G	N	E	D	D	M	L	F	M	T	L	E	F	P	S	G	K	L	A	T	L	E	W	G	S	A	F	N	W	P	.
Query Conservation																																																																																.
Alig confidence																																									.																																							.
Template Conservation																																									.
Template Sequence	D	W	F	Y	Q	K	R	Q	Y	G	G	I	L	C	D	I	G	I	H	Q	I	E	Q	F	L	Y	F	T	G	N	T	N	A	R	V	V	T	S	Q	T	.	A	N	Y	H	H	P	H	H	P	E	F	E	D	F	G	D	A	X	L	L	G	D	N	G	A	T	G	Y	F	R	C	D	W	F	T	P	D	G	L
Template Known Secondary structure	G	G	G	G												T													T		S										.			S	S		T	T	S	T	T			S									T	T	S									S	B			T	T	S
Template Predicted Secondary structure																																									.
Template SS confidence
	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

					237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure	.	.	.	.
Query SS confidence	.	.	.	.
Query Sequence	.	.	.	.	E	H	Y	V	I	I	N	G	T	K	G	S	I	K	I	D	M	Q	E	T	A	G	S	L	R	I	G	G	Q	T	K	H	F	L	V	H	E	T	Q	E	E	D	D	D	R	R	K	G	N	M	T	S	E	M	D	G	A	I	A	Y	G	H	P	G	K	K	T	P	L	W	L	A	S	L	I	R
Query Conservation	.	.	.	.
Alig confidence	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	V	W	G	D	G	R	L	T	I	L	G	T	E	G	Y	I	E	I	R	K	Y	V	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	G	E	S	N	V	V	Y	L	V	N	G	K	G	E	Q	R	F	T	P	A	G	S	V	E	R	A
Template Known Secondary structure	S	S	S										S	S								S		B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	B		S						S	S	S								T	T	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																												.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	E	T	L	F	L	H	N	I	L	C	G	A	K	P	E	E	D	Y	I	D	L	L	N	G	E	A	A	M	S	A	I	A	T	A	D	A	A	T	L	S	R	S
Query Conservation
Alig confidence																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence	F	F	P	D	F	L	R	D	C	R	E	R	T	E	N	.	.	.	.	.	.	A	X	S	Q	S	H	I	F	K	A	T	E	L	S	I	L	A	Q	Q	A	A	N
Template Known Secondary structure																.	.	.	.	.	.	S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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