Job Description P39353 Confidence 100.00% Date Thu Jan 5 11:59:42 GMT 2012 Rank 18 Aligned Residues 345 % Identity 18% Template c2nvwB_ PDB info PDB header:transcription Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis Resolution 2.10 Å

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		2	.	.	.	.	.	.	.					10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure										.	.	.	.														.													.	.													.	.	.
Query SS confidence										.	.	.	.														.													.	.													.	.	.
Query Sequence		I	N	Y	G	V	V	G	V	.	.	.	.	G	Y	F	G	A	E	L	A	R	F	M	N	M	.	H	D	N	A	K	I	T	C	V	Y	D	P	.	.	E	N	G	E	N	I	A	R	E	L	Q	C	.	.	.	I	N	M	S	S	L	D	A	L	V	S	S	K	L	V	D	C	V	I	V	A	T	P	N	Y
Query Conservation										.	.	.	.														.													.	.													.	.	.
Alig confidence										.	.	.	.														.													.	.													.	.	.
Template Conservation
Template Sequence		I	R	V	G	F	V	G	L	T	S	G	K	S	W	V	A	K	T	H	F	L	A	I	Q	Q	L	S	S	Q	F	Q	I	V	A	L	Y	N	P	T	L	K	S	S	L	Q	T	I	E	Q	L	Q	L	K	H	A	T	G	F	D	S	L	E	S	F	A	Q	Y	K	D	I	D	M	I	V	V	S	V	K	V	P
Template Known Secondary structure								S			S	T	T	S					T								T	T	T	T									S	S											T	T		T	T					S									T	T		S						S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																											.
Query SS confidence															.	.	.	.	.	.																											.
Query Sequence		L	H	K	E	P	V	I	K	A	A	K	N	K	.	.	.	.	.	.	K	H	V	F	C	E	K	P	I	A	L	S	Y	E	D	C	V	D	M	V	K	A	C	K	E	A	.	G	V	T	F	M	A	G	H	I	M	N	F	F	N	G	V	Q	Y	A	R	K	L	I	K	E	G	V	I	G	E	I	L	S	C
Query Conservation															.	.	.	.	.	.																											.
Alig confidence															.	.	.	.	.	.																											.
Template Conservation
Template Sequence		E	H	Y	E	V	V	K	N	I	L	E	H	S	S	Q	N	L	N	L	R	Y	L	Y	V	E	W	A	L	A	A	S	V	Q	Q	A	E	E	L	Y	S	I	S	Q	Q	R	A	N	L	Q	T	I	I	C	L	Q	G	R	K	S	P	Y	I	V	R	A	K	E	L	I	S	E	G	C	I	G	D	I	N	S	I
Template Known Secondary structure													T	T	T	T		S	S								S	S	S	S	S	S													T		T	T								G	G	G	G													T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		145	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.											.	.
Predicted Secondary structure							.	.	.	.																							.																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.																							.																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		H	T	K	R	N	.	.	.	.	G	W	E	N	K	Q	E	R	L	S	W	K	K	M	K	E	Q	S	G	G	H	L	.	Y	H	H	I	H	E	L	D	C	V	Q	H	L	L	G	E	I	P	E	T	V	T	M	I	G	G	N	L	A	H	S	G	P	G	F	G	.	.	.	.	.	.	.	.	.	.	N	E
Query Conservation							.	.	.	.																							.																																					.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																							.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	S	G	N	G	G	W	Y	G	Y	E	R	P	M	R	S	P	E	Y	L	Y	D	I	E	S	G	V	N	L	I	S	N	S	F	G	H	T	I	D	V	L	Q	Y	I	T	G	S	Y	F	Q	K	I	N	A	M	I	S	N	N	I	P	T	Q	F	L	L	D	E	N	R	T	K	E	T	I	S	K	T	C
Template Known Secondary structure								S	B	T	S	S				S	S								G	G	G	S		S	T	T	T	T														T																					S					S							S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.						.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		D	D	M	L	F	M	T	L	E	F	P	S	G	K	L	A	T	L	E	W	G	S	A	.	.	.	.	.	F	N	W	P	E	H	Y	V	I	I	N	G	T	K	G	S	I	K	I	D	M	Q	E	T	A	G	S	L	R	I	G	G	Q	T	K	H	F	L	V	H	E	T	Q	E	E	D	D	D	R	R	K	G
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	H	L	L	F	Q	G	I	L	E	N	G	K	V	P	V	S	C	S	F	K	G	G	T	P	V	K	K	L	T	K	N	L	V	I	D	I	H	G	T	K	G	D	L	K	I	E	G	D	A	G	S	N	L	V	L	Y	F	Y	G	I	K	N	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	T	T										B	S	S			S	S	S		S								S	S																					S				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		N	M	T	S	E	M	D	G	A	I	A	Y	G	H	P	G	K	K	T	P	L	W	L	A	S	L	I	R	K	E	T	L	F	L	H	N	I	L	C	G	A	K	P	E	E	D	Y	.	.	I	D	L	L	N	G	E	A	A	M	S	A	I	A	T	A	D	A	A	T	L	S	R	S	Q	D	R	K	V	K	I
Query Conservation																																																	.	.
Alig confidence		.	.	.	.	.	.																																										.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	E	Q	T	M	E	V	F	H	L	R	N	Y	N	S	V	V	G	N	I	L	R	I	Y	E	S	I	A	D	Y	H	F	L	G	K	F	D	K	Q	G	F	R	F	E	G	F	P	T	F	K	D	A	I	I	L	H	R	L	I	D	A	V	F	R	S	D	K	E	E	K	T	L	D	V
Template Known Secondary structure		.	.	.	.	.	.											S	S																					T							T	T		S	S	S																								T	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		363	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	I	M
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		453	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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