Job Description P39353 Confidence 100.00% Date Thu Jan 5 11:59:42 GMT 2012 Rank 17 Aligned Residues 355 % Identity 16% Template c2ixaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase Resolution 2.3 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	Y	G	V	V	G	V	G	Y	F	G	A	E	L	A	R	F	M	N	M	H	D	N	A	K	I	T	C	V	Y	D	P	.	.	E	N	G	E	N	I	A	R	E	L	Q	.	.	.	.	.	.	.	.	.	.	C	I	N	M	S	S	L	D	A	L	V	S	S	K	L	V	D	C	V	I	V	A	T	P
Query Conservation																																			.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	I	A	F	I	A	V	G	L	R	G	Q	T	H	V	E	N	M	A	R	R	D	D	V	E	I	V	A	F	A	D	P	D	P	Y	M	V	G	R	A	Q	E	I	L	K	K	N	G	K	K	P	A	K	V	F	G	N	G	N	D	D	Y	K	N	M	L	K	D	K	N	I	D	A	V	F	V	S	S	P
Template Known Secondary structure										S												T		T	T									S															T	T									S	S	T	T	T					T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	L	H	K	E	P	V	I	K	A	A	K	N	K	K	H	V	F	C	E	K	P	I	A	L	S	Y	E	D	C	V	D	M	V	K	A	C	K	E	A	G	V	T	F	M	A	G	H	I	M	N	F	F	N	G	V	Q	Y	A	R	K	L	I	K	E	G	V	I	G	E	I	L	S	C	H	T	K	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	E	W	H	H	E	H	G	V	A	A	M	K	A	G	K	I	V	G	M	E	V	S	G	A	I	T	L	E	E	C	W	D	Y	V	K	V	S	E	Q	T	G	V	P	L	M	A	L	E	N	V	C	Y	R	R	D	V	M	A	I	L	N	M	V	R	K	G	M	F	G	E	L	V	H	G	T	G	G	Y	Q
Template Known Secondary structure		G	G	G											T	T											S	S																							G	G	G	G													T	T	T	T		S									B
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																																		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	E	N	K	Q	E	R	L	S	W	K	K	M	K	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	H	L	Y	H	H	I	H	E	L	D	C	V	Q	H	L	L	G	E	I	P	E	T	V	T	M	I	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	L	R	P	V	L	F	N	S	G	I	N	G	K	N	G	D	G	V	E	F	G	E	K	A	F	S	E	A	K	W	R	T	N	H	Y	K	N	R	N	G	E	L	Y	P	T	H	G	V	G	P	L	H	T	M	M	D	I	N	R	G	N	R	L	L	R	L	S	S	F	A	S	K	A	R	G	L	H	K
Template Known Secondary structure										B		S		T	T			S	S			B		S	T	T	S		G	G	G	G	T										S																T	B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		197							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.																																											.
Query SS confidence			.	.	.	.	.	.																																											.
Query Sequence		G	.	.	.	.	.	.	N	L	A	H	S	G	P	G	F	G	N	E	D	D	M	L	F	M	T	L	E	F	P	S	G	K	L	A	T	L	E	W	G	S	A	F	N	W	P	E	H	Y	.	V	I	I	N	G	T	K	G	S	I	K	I	D	M	Q	E	T	A	G	S	L	R	I	G	G	Q	T	K	H	F
Query Conservation			.	.	.	.	.	.																																											.
Alig confidence			.	.	.	.	.	.																																											.
Template Conservation
Template Sequence		Y	I	V	D	K	G	G	E	S	H	P	N	A	K	V	E	W	K	Q	G	D	I	V	T	T	Q	I	Q	C	H	N	G	E	T	I	V	L	T	H	D	T	S	L	Q	R	P	Y	N	L	G	F	K	V	Q	G	T	E	G	L	W	E	D	F	G	W	G	E	A	A	Q	G	F	I	Y	F	E	K	I	M	N
Template Known Secondary structure									T	T	S	G	G	G	G					S		S									T	T	S								B		S	S													S	S							S	S	S		T	T	S						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	H	E	T	Q	E	E	D	D	D	R	R	K	G	N	M	T	S	E	M	D	G	A	I	A	Y	G	H	P	G	K	K	T	P	L	W	L	A	S	L	I	R	K	E	T	L	F	L	H	N	I	L	C	G	A	K	P	E	E	D	Y	I	D	L	L	N	G	E	A	A	M	S	A	I	A	T	A	D	A
Query Conservation
Alig confidence																									.	.	.	.	.																															.	.	.	.	.	.
Template Conservation																									.	.	.	.	.																															.	.	.	.	.	.
Template Sequence		H	S	H	R	W	D	S	S	E	K	W	I	K	E	Y	D	H	P	M	W	K	K	H	.	.	.	.	.	E	Q	K	A	V	G	A	G	H	G	G	M	D	Y	F	L	D	N	T	F	V	E	C	I	K	R	N	E	A	F	.	.	.	.	.	.	P	L	D	V	Y	D	L	A	T	W	Y	S	I	T	P	L
Template Known Secondary structure		T			S				S							T									.	.	.	.	.					S	T	T	S			T																T				.	.	.	.	.	.	S	S
Template Predicted Secondary structure																									.	.	.	.	.																															.	.	.	.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.						.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.							.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		A	T	L	S	R	S	Q	D	.	R	K	V	K	I	S	E	I	I	K
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		S	E	K	S	I	A	E	N	G	A	V	Q	E	I	P	D	F	T	N
Template Known Secondary structure								T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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