|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | N | Y | G | V | V | G | V | G | Y | F | G | A | E | L | A | R | F | M | N | M | H | D | N | A | K | I | T | C | V | Y | D | P | E | N | G | E | N | I | A | R | E | L | Q | C | I | N | M | S | S | L | D | A | L | V | S | S | K | L | V | D | C | V | I | V | A | T | P | N | Y | L | H | K | E | P | V | I | K | A | A |
Query Conservation |   |
|
|
|
|
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|   |
|   |
|
|   |   |   |   |   |   |
|   |   | . |   |   |   |   |
|   |
|
|   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|   | . |   |   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
M | L | V | G | L | I | G | Y | G | A | I | G | K | F | L | A | E | W | L | E | R | . |
N | G | F | E | I | A | A | I | L | D | V | R | G | E | . |
. |
. |
. |
. |
. |
. |
H | E | K | M | V | R | G | I | D | E | F | L | . |
Q | R | E | M | D | V | A | V | E | A | A | S | Q | Q | A | V | K | D | Y | A | E | K | I | L |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | . | T | T |
|  |  |  |  |  |  |
| S | S |
|
| . | . | . | . | . | . | . |
| T | T |  |  | S | S |  |  |  |  | T | . | T | S |
|
| S |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |
|
|  |  | . | . | . | . | . | . | . |  |
|
|
|
|
|
|  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 40 | . | . | . | . | . | . | . | |
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | |
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | N | K | K | H | V | F | C | E | K | P | I | A | L | S | Y | E | D | . |
C | V | D | M | V | K | A | C | K | E | A | G | V | T | F | M | A | G | H | I | M | . |
N | F | F | N | G | V | Q | Y | A | R | K | L | I | K | E | G | V | I | G | E | I | L | S | C | H | T | K | R | N | G | W | E | N | K | Q | E | R | L | S |
Query Conservation |   |
  |   |
|
|
|
|   |   |
|
|
|   |
|   |
|   |   |
| . |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   | . |
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|
|
|   |
|
|   |
|
|
|
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |
|   |
|
|
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
K | A | G | I | D | L | I | V | L | S | T | G | A | F | A | D | R | D | F | L | S | R | V | R | E | V | C | R | K | T | G | R | R | V | Y | I | A | S | G | A | I | G | G | L | D | A | I | F | S | A | S | E | L | I | E | E | I | V | L | . |
. |
. |
. |
T | T | R | K | N | W | R | Q | F | G | R | K | G | V | I | F | E |
Template Known Secondary structure |   |
 | T | T |
|  |  |  |  | S |
| G | G | G | G | G | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
| T | T |
| S |
|  |  |  |  |  |  | T | G | G | G |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  | G | G | G | T | T | S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | |
|
|
|
. | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
  |
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | K | K | M | K | E | Q | S | G | G | H | L | Y | H | H | I | H | E | L | D | C | V | Q | H | L | L | G | E | I | P | E | T | V | T | M | I | G | G | N | L | A | H | S | G | P | G | F | G | N | E | D | D | M | L | F | M | T | L | E | F | P | S | G | K | L |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |
|   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |
|   |
|   |
|   |
| . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
G | S | A | S | E | A | A | Q | K | F | P | K | N | L | N | V | A | A | T | L | S | I | A | S | G | K | D | V | K | V | R | L | V | A | D | E | V | E | E | N | I | H | E | I | L | V | R | G | . |
. |
. |
E | F | G | E | M | E | I | R | V | R | N | R | P | M |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | S | T | T |
|
|  |  |  |  |  |  |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  | S |
| S | S |  |  |  |  |  |  |  |  |  | . | . | . | T | T |  |  |  |  |  |  |  |  |  |
|  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
148 | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | |
|
|
. | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
  |