Job Description P37387 Confidence 98.54% Date Thu Jan 5 11:55:34 GMT 2012 Rank 76 Aligned Residues 223 % Identity 9% Template d2liva_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.40

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		24	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.										.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure												.								.														.	.	.	.	.	.	.	.	.
Query SS confidence												.								.														.	.	.	.	.	.	.	.	.
Query Sequence		K	E	V	K	I	G	M	A	I	D	.	D	L	R	L	E	R	W	.	Q	K	D	R	D	I	F	V	K	K	A	E	S	.	.	.	.	.	.	.	.	.	L	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G
Query Conservation												.								.														.	.	.	.	.	.	.	.	.
Alig confidence												.								.														.	.	.	.	.	.	.	.	.																																			.
Template Conservation																																																																													.
Template Sequence		E	D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	A	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	.	H	L	C	S
Template Known Secondary structure												S	S	S	S	S																					T	T	T	B	T	T	B										T	T															T	T							.			S
Template Predicted Secondary structure																																																																													.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence		Q	V	L	S	N	V	V	K	E	A	K	Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	D	.	.	.	.	.	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.																																					.	.
Template Conservation																																																																					.	.
Template Sequence		S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	.	.	K	Q	Q	Y	G	E	G	L	A	R	A
Template Known Secondary structure														T	T						S	S				G	G	G	S	S	S			S	S					S			G	G	G												T	T			S	S							.	.	S	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	K	V	L	K	P	Y	V	D	S	G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	G	K	V	A	I	S	G	Q	D	A	D
Query Conservation
Alig confidence																																.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.
Template Sequence		V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	.	.	.	.	.	.	.	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N
Template Known Secondary structure								T	T	T											T	T										.	.	.	.	.	.	.					T	T		S						S															T	T									G	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		248	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	I	K	R	I	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	L	S	N	I	A	G	E
Template Known Secondary structure									G	G
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions