Job Description P37387 Confidence 100.00% Date Thu Jan 5 11:55:34 GMT 2012 Rank 9 Aligned Residues 290 % Identity 22% Template d1gcaa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		E	V	K	I	G	M	A	I	D	D	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	.	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q	V	L	S	N	V	V	K	E	A	K
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	K	D	G	K	S	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R
Template Known Secondary structure										S		T	T																	T	S	T	T									T	T															T	T		S							S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120						.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.												.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	D	A	D	.	.	.	.	.	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	.	.	.	.	.	.	.	.	.	.	.	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G
Query Conservation																			.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	V	I	Q	G	D	L	I	A	K	H	W	Q	A	N	Q	G	W	D	L	N	K	D	G	K	I	Q	Y	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y
Template Known Secondary structure			T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		Q	M	K	V	L	K	P	Y	V	D	S	G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	.	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	G	K	V	A	I	S	G	Q	D	A
Query Conservation																																														.
Alig confidence															.	.	.																													.																								.
Template Conservation															.	.	.																																																					.
Template Sequence		V	V	K	E	L	N	D	K	G	I	Q	T	E	.	.	.	Q	L	A	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	K	S	S	I	P	V	F	G	V	D	A
Template Known Secondary structure									T	T					.	.	.								T	T														T	S	T	T	G	G	G							S	S														T	T	.		T	T	S					S	B
Template Predicted Secondary structure															.	.	.																																																					.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	A	G	I	K	R	I	A	A	G	T	Q	T	M	T	V	Y	K	P	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N	G	Q	E	P	K	A	D	T	T	L	N	N	G	L	K	D	V	P	S	R	L	L	T	P	I	D	V	N	K	N	N	I	K	D	T	V	I	K
Query Conservation
Alig confidence																																															.	.	.
Template Conservation																																															.	.	.
Template Sequence		L	P	E	A	L	A	L	V	K	S	G	A	M	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	E	G	K	G	A	A	D	G	T	.	.	.	S	W	K	I	E	N	K	I	V	R	V	P	Y	V	G	V	D	K	D	N	L	S	E	F	T	Q	K
Template Known Secondary structure												T	S	S		B																						T	T	S		T	T	T	T	S	.	.	.					B	T	T											T	T	T	G	G	G	T	S
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions