Job Description P37387 Confidence 99.97% Date Thu Jan 5 11:55:34 GMT 2012 Rank 55 Aligned Residues 254 % Identity 11% Template d1byka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.50

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	V	K	I	G	M	A	I	D	D	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q	V	L	S	N	V	V	K	E	A	K
Query Conservation
Alig confidence																																																																												.	.	.	.
Template Conservation																																																																												.	.	.	.
Template Sequence		S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	G	I	T	E	E	M	.	.	.	.	L	A
Template Known Secondary structure											S		T	T																			T									T	T														T	T	T										T	T			T	T	T	.	.	.	.	S	G
Template Predicted Secondary structure																																																																												.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	D	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q	M	K	V	L	K	P	Y	V	D	S	G	K	I	K	V
Query Conservation
Alig confidence																		.	.	.
Template Conservation																		.	.	.
Template Sequence		H	W	Q	S	S	L	V	L	L	A	R	D	A	K	G	F	.	.	.	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H	P	V	A	A	L
Template Known Secondary structure		G	G	S	S	S					S	S			S	S		.	.	.																					T	T											T	T	S	T	T	T	T														T	T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	G	K	V	A	I	S	G	Q	D	A	D	L	A	G	I	K	R	I	A	A	G	T	Q	T	M	T	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.																																						.														.	.									.
Template Conservation							.	.	.	.	.	.	.	.	.																																						.														.	.									.
Template Sequence		P	G	L	A	M	.	.	.	.	.	.	.	.	.	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	.	.	L	M	K	F	L	H	P	E	.	I	V	T	V
Template Known Secondary structure				S			.	.	.	.	.	.	.	.	.							S	G	G	G			T	T							S	S														T	T	.			S											.	.							T	T	.	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																						.														.	.									.
Template SS confidence
		214	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.		.	.	.	280
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	P	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N	G	Q	E	P	K	A	D	T	T	L	N	N	G	L	K	D	V	P	S	R	L	L	T	P	I	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	G	Y	A	E	A	G	R	Q	A	A	C	Q	L	I	A	Q	V	T	G	R	S	E	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	I	I	P	A	T	L
Template Known Secondary structure		B																			T	T	S					.	.	.	.	.	.	.	.	.	.	.	.							B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.													.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions