Job Description P37387 Confidence 98.26% Date Thu Jan 5 11:55:34 GMT 2012 Rank 83 Aligned Residues 223 % Identity 6% Template c3td9A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																						.	.	.	.	.	.
Query SS confidence											.	.																						.	.	.	.	.	.
Query Sequence		V	K	I	G	M	A	I	D	D	.	.	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	G	.	.	.	.	.	.	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q	V	L	S	N
Query Conservation											.	.																						.	.	.	.	.	.
Alig confidence											.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	I	A	V	I	L	P	X	T	G	G	I	S	A	F	G	R	X	V	W	E	G	I	Q	I	A	H	E	E	K	P	T	V	L	G	E	E	V	E	L	V	L	L	D	T	R	S	E	K	T	E	A	A	N	A	A	A	R	A	I	D	K	E	K	V	L	A	I	I	G	E	V	A	S	A	H	S	L	A
Template Known Secondary structure											S	S	T	T																						T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		V	V	K	E	A	K	Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	D	.	.	.	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q	M	K	V	L	K	P
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		I	A	P	I	A	E	E	N	K	V	P	X	V	T	P	A	S	T	N	P	L	V	T	Q	G	R	K	F	V	S	R	V	C	F	I	D	P	F	Q	G	A	A	X	A	V	F	A	Y	K	N	L	G	A	K	R	V	V	V	F	T	D	V	E	Q	D	Y	S	V	G	L	S	N	F	F	I	N	K	F	T	E
Template Known Secondary structure									T	T						S	S				G	G	G	T	T	T		S	S				S	S																	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	D	S	G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	G	K	V	A	I	S	G	Q	D	A	D	L	A	G	I	K	R	I
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																.
Template Conservation																		.	.	.	.	.	.	.																.
Template Sequence		L	G	G	Q	V	K	R	V	F	F	R	S	G	D	Q	D	.	.	.	.	.	.	.	F	S	A	Q	L	S	V	A	X	S	F	N	P	D	A	.	I	Y	I	T	G	Y	Y	P	E	I	A	L	I	S	R	Q	A	R	Q	L	G	F	T	G	Y	I	L	A	G	D	G	A	D	A	P	E	L	I	E	I	G
Template Known Secondary structure		T	T										T	T				.	.	.	.	.	.	.											T			S		.					S															T	T			S						G	G	G		S	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.																.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		255	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		253	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions