Job Description P37387 Confidence 100.00% Date Thu Jan 5 11:55:34 GMT 2012 Rank 31 Aligned Residues 272 % Identity 15% Template c3k4hA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 Resolution 2.80 Å

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		24	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		K	E	V	K	I	G	M	A	I	D	D	.	.	.	.	.	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q	V	L	S	N	V
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																																																												.	.
Template Conservation																																																																													.	.
Template Sequence		T	T	K	T	L	G	L	V	X	P	S	S	A	S	K	A	F	Q	N	P	F	F	P	E	V	I	R	G	I	S	S	F	A	H	V	E	G	Y	A	L	Y	X	S	T	G	E	T	E	E	E	I	F	N	G	V	V	K	X	V	Q	G	R	Q	I	G	G	I	I	L	L	Y	S	R	E	N	.	.	D	R	I
Template Known Secondary structure											S	S						T	T	S	T																T	T										S														T	T								S			B	T	T	.	.
Template Predicted Secondary structure																																																																													.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	E	A	K	Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	D	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q	M	K	V	L	K	P	Y	V	D	S
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		I	Q	Y	L	H	E	Q	N	F	P	F	V	L	I	G	K	P	Y	D	R	K	D	E	I	T	Y	V	D	N	D	N	Y	T	A	A	R	E	V	A	E	Y	L	I	S	.	L	G	H	K	Q	I	A	F	I	G	G	G	S	D	L	L	V	T	R	D	R	L	A	G	X	S	D	A	L	K	L	A	D	I	V
Template Known Secondary structure								T	T							S			S	S		T	T	T	S																					.	T	T									S		T	T	B																	T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	.	.	S	G	K	V	A	I	S	G	Q	D	A	D	L	A	G	I	K	R	I	A	A
Query Conservation																																																											.	.
Alig confidence					.	.	.	.																																																			.	.
Template Conservation					.	.	.	.
Template Sequence		L	P	K	.	.	.	.	E	Y	I	L	H	F	D	F	S	R	E	S	G	Q	Q	A	V	E	E	L	X	G	L	Q	Q	P	P	T	A	I	X	A	T	D	D	L	I	G	L	G	V	L	S	A	L	S	K	K	G	F	V	V	P	K	D	V	S	I	V	S	F	N	N	A	L	L	S	E	I	A	S	P	P
Template Known Secondary structure				G	.	.	.	.	G	G						S	S													T	S	S	S			S					S	S														T	T			T	T	T	T							S								S	S	S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		164	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	Q	T	M	T	V	Y	K	P	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N	G	Q	E	P	K	A	D	T	T	L	N	N	G	L	K	D	V	P	S	R	L	L	T	P	I	D	V	N	K	N	N	I	K
Query Conservation
Alig confidence		.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	L	S	T	V	D	V	N	I	Y	Q	L	G	Y	E	A	A	K	A	L	V	D	K	V	E	N	A	E	S	T	A	K	.	.	.	.	.	.	.	.	.	.	.	C	I	I	I	P	H	K	L	L	K	R	Q	T	C	E
Template Known Secondary structure		.	.	.																											S					.	.	.	.	.	.	.	.	.	.	.												S	S
Template Predicted Secondary structure		.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270												.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions