Job Description P37387 Confidence 98.38% Date Thu Jan 5 11:55:34 GMT 2012 Rank 81 Aligned Residues 249 % Identity 12% Template c3ip5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Resolution 1.35 Å

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		25	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.										.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure												.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		E	V	K	I	G	M	A	I	D	D	.	.	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	.	.	.	.	.	.	.	.	.	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q
Query Conservation												.	.																					.	.	.	.	.	.	.	.	.
Alig confidence												.	.																					.	.	.	.	.	.	.	.	.																															.
Template Conservation																																																																									.
Template Sequence		D	V	V	I	A	V	G	A	P	L	T	G	P	N	A	A	F	G	A	Q	I	Q	K	G	A	E	Q	A	A	K	D	I	N	A	A	G	G	I	N	G	E	Q	I	K	I	V	L	G	D	D	V	S	D	P	K	Q	G	I	S	V	A	N	K	F	V	A	D	G	V	K	F	.	V	V	G	H	F	N	S	G
Template Known Secondary structure												S	S	T	T																					T	T		B	T	T	B										T	T															T	T				.					S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		V	L	S	N	V	V	K	E	A	K	Q	E	G	I	K	V	L	A	Y	D	R	M	I	.	.	.	.	.	N	D	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																																						.	.
Template Conservation																																																																			.	.
Template Sequence		V	S	I	P	A	S	E	V	Y	A	E	N	G	I	L	E	I	T	P	A	A	T	N	P	V	F	T	E	R	G	L	W	N	T	F	R	T	C	G	R	D	D	Q	Q	G	G	I	A	G	K	Y	L	A	D	H	F	K	D	A	K	V	A	I	I	H	.	.	D	K	T	P	Y	G	Q	G	L	A	D	E	T
Template Known Secondary structure													T	T						S	S				G	G	G	G	S	S			T	T				S	S																			T	T								.	.		S	S
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	L	K	P	Y	V	D	S	G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	G	K	V	A	I	S	G	Q	D	A	D	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		K	K	A	A	N	A	A	G	V	T	E	V	M	Y	E	G	V	N	V	G	D	K	D	F	S	A	.	.	.	.	.	.	.	L	I	S	K	M	K	E	A	G	V	S	I	I	Y	W	G	G	L	H	T	E	A	G	L	I	I	R	Q	A	A	D	Q	G	L	K	A	K	L	V	S	G	D	G	I	V	S	N
Template Known Secondary structure								T	T				S							T	T							.	.	.	.	.	.	.								T	T								S															T	T									G	G	G		S	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.																										.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	I	K	R	I	A	A	G	T	Q	T	M	T	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	A	S	I	A	G	D	A	V	E	G	T	L	N	T	F	G	P	D	P	T	L	R	P	E	N	K	E	L	V	E	K	F	K	A	A	G	F	N	P	E	A	Y	T	L	Y	S	Y	A	A	M	Q	A	I	A	G	A	A	K
Template Known Secondary structure								G	G	G	G	T	T						S			G	G	G		G	G	G										T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions