Job Description P37387 Confidence 98.25% Date Thu Jan 5 11:55:34 GMT 2012 Rank 84 Aligned Residues 254 % Identity 10% Template c3hutA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum Resolution 1.93 Å

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		25	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.										.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure											.								.														.	.	.	.	.	.	.	.	.
Query SS confidence											.								.														.	.	.	.	.	.	.	.	.
Query Sequence		E	V	K	I	G	M	A	I	D	.	D	L	R	L	E	R	W	.	Q	K	D	R	D	I	F	V	K	K	A	E	S	.	.	.	.	.	.	.	.	.	L	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q
Query Conservation											.								.														.	.	.	.	.	.	.	.	.
Alig confidence											.								.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	L	L	G	Y	E	L	P	L	T	G	A	N	A	A	Y	G	R	V	F	Q	E	A	A	R	L	Q	L	D	R	F	N	A	A	G	G	V	G	G	R	P	V	D	I	L	Y	A	D	S	R	D	D	A	D	Q	A	R	T	I	A	R	A	F	V	D	D	P	R	V	V	G	V	L	G	D	F	S	S	T
Template Known Secondary structure											S	S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		V	L	S	N	V	V	K	E	A	K	Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	.	.	.	.	D	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q	M
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																																				.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		V	S	X	A	A	G	S	I	Y	G	K	E	G	X	P	Q	L	S	P	T	A	A	H	P	D	Y	I	K	I	S	P	W	Q	F	R	A	I	T	T	P	A	F	E	G	P	N	N	A	A	W	X	I	G	D	G	F	T	S	V	A	V	I	G	.	.	.	V	T	T	D	W	G	L	S	S	A	Q	A	F	R
Template Known Secondary structure														T						S	S				G	G	G	T	T	S		T	T				S	S			G	G	G												T	T									.	.	.		S	S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	L	K	P	Y	V	D	S	G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	G	K	V	A	I	S	G	Q	D	A	D	L	A
Query Conservation
Alig confidence																								.	.	.	.	.	.																.
Template Conservation																								.	.	.	.	.	.																.
Template Sequence		K	A	F	E	L	R	G	G	A	V	V	V	N	E	E	V	P	P	G	N	R	R	.	.	.	.	.	.	F	D	D	V	I	D	E	I	E	D	E	A	P	Q	A	.	I	Y	L	A	X	A	Y	E	D	A	A	P	F	L	R	A	L	R	A	R	G	S	A	L	P	V	Y	G	S	S	A	L	Y	S	P	K
Template Known Secondary structure							T	T											T	T				.	.	.	.	.	.														S		.					S															T	T									G	G	G		S
Template Predicted Secondary structure																								.	.	.	.	.	.																.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		G	I	K	R	I	A	A	G	T	Q	T	M	T	V	Y	K	P	.	.	.	.	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N	G	Q	E	P	K
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.
Template Conservation
Template Sequence		F	I	D	L	G	G	P	A	V	E	G	V	R	L	A	T	A	F	V	L	G	A	S	D	P	V	V	V	E	F	V	S	A	Y	E	T	L	Y	G	A	I	P	T
Template Known Secondary structure							G	G	G	G	T	T						S			T	T			S															S	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions