Job Description P37387 Confidence 100.00% Date Thu Jan 5 11:55:34 GMT 2012 Rank 26 Aligned Residues 268 % Identity 14% Template c3h5oB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum Resolution 2.30 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	I	G	M	A	I	D	D	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q	V	L	S	N	V	V	K	E	A	K	Q	E
Query Conservation
Alig confidence																																																																						.	.
Template Conservation																																																																						.	.
Template Sequence		R	T	V	L	V	L	I	P	S	L	A	N	T	V	F	L	E	T	L	T	G	I	E	T	V	L	D	A	A	G	Y	Q	X	L	I	G	N	S	H	Y	D	A	G	Q	E	L	Q	L	L	R	A	Y	L	Q	H	R	P	D	G	V	L	I	T	G	L	S	H	A	.	.	E	P	F	E	R	I	L	S	Q	H
Template Known Secondary structure									S		S	T	T		T	T														T	T									T	T														T	T			S						S	S				.	.	T	T								T
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	K	V	L	A	Y	D	R	M	I	N	D	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q	M	K	V	L	K	P	Y	V	D	S	G	K	I	K	V	V	G
Query Conservation
Alig confidence												.	.																															.	.																																	.	.	.
Template Conservation												.	.																															.	.																																	.	.	.
Template Sequence		A	L	P	V	V	Y	X	X	D	L	.	.	A	D	D	G	R	C	C	V	G	F	S	Q	E	D	A	G	A	A	I	T	R	H	L	L	S	R	G	K	R	R	.	.	I	G	F	L	G	A	Q	L	D	E	R	V	X	K	R	L	D	G	Y	R	A	A	L	D	A	A	D	C	R	D	A	G	.	.	.	L
Template Known Secondary structure		T								S		.	.		S	S	S																						T	T			S	.	.							S																				T				G	G	.	.	.	G
Template Predicted Secondary structure												.	.																															.	.																																	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	.	.	G	K	V	A	I	S	G	Q	D	A	D	L	A	G	I	K	R	I	A	A	G	T	Q	T	M	T	V
Query Conservation																																																					.	.
Alig confidence																																																					.	.													.	.										.
Template Conservation																																																																			.	.										.
Template Sequence		E	W	L	D	P	Q	P	S	S	X	Q	X	G	A	D	X	L	D	R	A	L	A	E	R	P	D	C	D	A	L	F	C	C	N	D	D	L	A	I	G	A	L	A	R	S	Q	Q	L	G	I	A	V	P	E	R	L	A	I	A	G	F	N	D	L	Q	.	.	P	A	A	W	C	T	P	P	L	.	T	T	V
Template Known Secondary structure							S																			T	T							S	S														T	T			T	T	T	T						S	B				.	.				T	S	S	S			.	B
Template Predicted Secondary structure																																																																			.	.										.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.		.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	P	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N	G	Q	E	P	K	A	D	T	T	L	N	N	G	L	K	D	V	P	S	R	L	L	T	P	I	D	V	N	K	N	N	I	K
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	P	R	R	D	I	G	V	H	A	A	K	A	L	L	Q	L	I	D	G	E	E	P	A	S	R	.	.	.	.	.	.	.	.	.	.	.	R	A	D	L	G	F	R	L	X	L	R	R	S	S	E
Template Known Secondary structure																					T	T				S		S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.												.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions