Job Description P37387 Confidence 100.00% Date Thu Jan 5 11:55:34 GMT 2012 Rank 15 Aligned Residues 276 % Identity 12% Template c3gbvB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis Resolution 2.20 Å

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		24	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																								.	.	.	.
Query SS confidence													.																								.	.	.	.
Query Sequence		K	E	V	K	I	G	M	A	I	D	D	.	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	G	A	K	.	.	.	.	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q	V	L	S	N	V
Query Conservation													.																								.	.	.	.
Alig confidence													.																								.	.	.	.
Template Conservation
Template Sequence		K	K	Y	T	F	A	C	L	L	P	K	H	L	E	G	E	Y	W	T	D	V	Q	K	G	I	R	E	A	V	T	T	Y	S	D	F	N	I	S	A	N	I	T	H	Y	D	P	Y	D	Y	N	S	F	V	A	T	S	Q	A	V	I	E	E	Q	P	D	G	V	X	F	A	P	T	V	P	Q	Y	T	K	G	F
Template Known Secondary structure															T	T	S																T	G	G	G											T	T																		S								S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		V	K	E	A	K	Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	D	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	.	.	.	.	.	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q	M	K	V	L	K
Query Conservation																																																				.	.	.	.	.
Alig confidence																																																				.	.	.	.	.
Template Conservation
Template Sequence		T	D	A	L	N	E	L	G	I	P	Y	I	Y	I	D	S	Q	I	K	D	A	P	P	L	A	F	F	G	Q	N	S	H	Q	S	G	Y	F	A	A	R	X	L	X	L	L	A	V	N	D	R	E	I	V	I	F	R	K	I	H	E	G	V	I	G	S	N	Q	Q	E	S	R	E	I	G	F	R	Q	Y	X	Q
Template Known Secondary structure									T							S	S			T	T	S			S																						S	T	T		S									B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	V	D	S	G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	L	S	G	K	V	A	I	S	G	Q	D	A	D	L	A	G	I	K	R
Query Conservation
Alig confidence																				.	.	.	.	.	.																																							.	.
Template Conservation																				.	.	.	.	.	.																																							.	.
Template Sequence		E	H	H	P	A	C	N	I	L	E	L	N	L	H	A	D	L	E	.	.	.	.	.	.	D	S	R	X	L	D	D	F	F	R	E	H	P	D	V	K	H	G	I	T	F	N	S	K	V	Y	I	I	G	E	Y	L	Q	Q	R	R	K	S	.	.	D	F	S	L	I	G	Y	D	L	L	E	R	N	V	T	C
Template Known Secondary structure					T	T	S									T	T			.	.	.	.	.	.													T	T							S	S	S		T										T	T			.	.	S							S
Template Predicted Secondary structure																				.	.	.	.	.	.																																							.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	G	T	Q	T	M	T	V	Y	K	P	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N	G	Q	E	P	K	A	D	T	T	L	N	N	G	L	K	D	V	P	S	R	L	L	T	P	I	D	V	N	K	N	N	I	K	D	T
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	E	G	T	V	S	F	L	I	A	Q	Q	P	E	L	Q	G	F	N	S	I	K	T	L	C	D	H	L	I	F	R	K	E	V	A	C	.	.	.	.	.	.	.	.	.	.	.	T	N	Y	X	P	I	D	L	L	T	K	E	N	I	D	Y	Y
Template Known Secondary structure					T	S																									T	S						S	.	.	.	.	.	.	.	.	.	.	.											T	T	T	G	G	G
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.												.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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