Job Description P37387 Confidence 99.95% Date Thu Jan 5 11:55:34 GMT 2012 Rank 62 Aligned Residues 281 % Identity 16% Template c1bdhA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex Resolution 2.70 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	N	V	A	A	H	A	K	E	V	K	I	G	M	A	I	D	D	L	R	L	E	R	W	Q	K	D	R	D	I	F	V	K	K	A	E	S	L	G	A	K	V	F	V	Q	S	A	N	G	N	E	E	T	Q	M	S	Q	I	E	N	M	I	N	R	G	V	D	V	L	V	I	I	P	Y	N	G	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	A	R	S	L	A	V	N	H	T	K	S	I	G	L	L	A	T	S	S	E	A	A	Y	F	A	E	I	I	E	A	V	E	K	N	C	F	Q	K	G	Y	T	L	I	L	G	N	A	W	N	N	L	E	K	Q	R	A	Y	L	S	M	M	A	Q	K	R	V	D	G	L	L	V	M	C	S	E	Y	P	E
Template Known Secondary structure										T			S							S		S	S	S																	T	T									T	T															T	T		S							S
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	N	V	V	K	E	A	K	Q	E	G	I	K	V	L	A	Y	D	R	M	I	N	D	A	D	I	D	F	Y	I	S	F	D	N	E	K	V	G	E	L	Q	A	K	A	L	V	D	I	V	P	Q	G	N	Y	F	L	M	G	G	S	P	V	D	N	N	A	K	L	F	R	A	G	Q	M	K	V	L	K	P
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	P	L	L	A	M	L	E	E	Y	R	H	I	P	M	V	V	M	D	W	G	E	A	K	A	D	F	T	D	A	V	I	D	N	A	F	E	G	G	Y	M	A	G	R	Y	L	I	E	R	G	H	R	E	I	G	V	I	P	G	P	L	E	R	N	T	G	A	G	R	L	A	G	F	M	K	A	M	E	E
Template Known Secondary structure		.	.								T	T	T	T	S						S		S	S				S	S	S																					T	T			S								T	T	S
Template Predicted Secondary structure		.	.
Template SS confidence
				129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		Y	V	D	S	G	K	I	K	V	V	G	D	Q	W	V	D	G	W	L	P	E	N	A	L	K	I	M	E	N	A	L	T	A	N	N	N	K	I	D	A	V	V	A	S	N	D	A	T	A	G	G	A	I	Q	A	L	S	A	Q	G	.	.	L	S	G	K	V	A	I	S	G	Q	D	A	D	L	A	G	I	K
Query Conservation																																																														.	.
Alig confidence									.	.	.	.																																																		.	.
Template Conservation									.	.	.	.
Template Sequence		A	M	I	K	V	P	E	.	.	.	.	S	W	I	V	Q	G	D	F	E	P	E	S	G	Y	R	A	M	Q	Q	I	L	S	Q	P	H	R	P	T	A	V	F	C	G	G	D	I	M	A	M	G	A	L	C	A	A	D	E	M	G	L	R	V	P	Q	D	V	S	L	I	G	Y	D	N	V	R	N	A	R	Y
Template Known Secondary structure		T	T					G	.	.	.	.	G	G	B					S	S													S	S	S	S			S					S	S														T	T			T	T	T	T										T	T	G	G	G
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	A	G	T	Q	T	M	T	V	Y	K	P	I	T	L	L	A	N	T	A	A	E	I	A	V	E	L	G	N	G	Q	E	P	K	A	D	T	T	L	N	N	G	L	K	D	V	P	S	R	L	L	T	P	I	D	V	N	K	N	N	I
Query Conservation
Alig confidence						.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	P	A	.	.	.	L	T	T	I	H	Q	P	K	D	S	L	G	E	T	A	F	N	M	L	L	D	R	I	V	N	K	R	E	E	P	Q	.	.	.	.	.	.	.	.	.	.	.	S	I	E	V	H	P	R	L	I	E	R	R	S	V
Template Known Secondary structure		S	S	S		.	.	.																									T				S			.	.	.	.	.	.	.	.	.	.	.												S	S
Template Predicted Secondary structure						.	.	.																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.												.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions