Job Description P14565 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 4 Aligned Residues 464 % Identity 22% Template c3e1sA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2 Resolution 2.20 Å

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		864	.	.	.	.	.	870	.	.	.	.	.			.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.				.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																																.	.	.
Query SS confidence														.	.																																																.	.	.
Query Sequence		A	Q	Q	A	I	H	L	A	L	P	V	V	.	.	E	S	K	K	L	A	F	S	M	V	D	L	L	T	E	A	K	S	F	A	A	E	G	T	G	F	T	E	L	G	G	E	I	N	A	Q	I	K	R	G	D	L	L	Y	V	D	V	.	.	.	A	K	G	Y	G	T	G	L	L	V	S	R	A	S	Y	E
Query Conservation														.	.																																																.	.	.
Alig confidence														.	.																					.	.																										.	.	.
Template Conservation																																				.	.
Template Sequence		L	T	A	A	A	V	Y	A	L	Q	L	A	G	T	Q	A	G	H	S	F	L	P	R	S	R	A	E	K	G	V	V	H	Y	T	.	.	R	V	T	P	G	Q	A	R	L	A	V	E	T	A	V	E	L	G	R	L	S	E	D	D	S	P	L	F	A	A	A	T	G	E	G	R	I	Y	L	P	H	V	L	R
Template Known Secondary structure																	T			S																.	.																		T	S	S								S					S
Template Predicted Secondary structure																																				.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		939	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.					.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		A	E	K	S	I	L	R	H	I	L	E	G	K	E	A	V	M	P	L	M	.	.	.	.	E	R	V	P	G	E	L	M	E	K	L	T	S	G	Q	R	A	A	T	R	M	I	L	E	T	S	D	R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	Q	F	R	A	V	M	S	A	V	N	M	L	P	E
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.																										.	.																										.	.	.	.
Template Conservation																																																			.	.																										.	.	.	.
Template Sequence		A	E	K	K	L	A	S	L	I	R	T	L	L	A	T	P	P	A	D	A	G	N	D	D	W	A	V	P	K	K	A	R	K	G	L	S	E	E	Q	A	S	V	L	D	Q	L	A	G	H	.	.	R	L	V	V	L	T	G	G	P	G	T	G	K	S	T	T	T	K	A	V	A	D	L	A	E	.	.	.	.
Template Known Secondary structure																S														T	T	T	T	T	T													T	T		.	.	S								T	T	S															.	.	.	.
Template Predicted Secondary structure																																																			.	.																										.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		1015	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.		.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		S	E	R	P	R	V	V	G	L	G	P	T	H	R	A	V	G	E	M	R	S	.	A	G	V	D	A	Q	T	L	A	S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	T	P	D	F	S	N	T	L	F	L	L	D	E	S	S	M	V	G	N	T	D	M	A	R	A	Y	A	L	I	A	A	G	G	G	R
Query Conservation																							.
Alig confidence																							.																																																							.
Template Conservation																																																																														.
Template Sequence		S	L	G	L	E	V	G	L	C	A	P	T	G	K	A	A	R	R	L	G	E	V	T	G	R	T	A	S	T	V	H	R	L	L	G	Y	G	P	Q	G	F	R	H	N	H	L	E	P	A	P	Y	D	L	L	I	V	D	E	V	S	M	M	G	D	A	L	M	L	S	L	L	A	A	V	P	P	.	G	A	R
Template Known Secondary structure			T	T								S	S												T	S									T	T			T	T			S		S	S	S	S			S		S							G	G	G											T	T	S		T	.	T
Template Predicted Secondary structure																																																																														.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.
		1094	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	S	G	D	T	D	Q	L	Q	A	I	A	P	G	Q	P	F	R	L	Q	Q	T	R	S	A	A	D	V	A	I	M	K	E	I	V	R	Q	T	P	E	L	R	E	A	V	Y	S	L	I	N	R	D	V	E	R	A	L	S	G	L	E	S	V	K	P	S	Q	V	P	R	Q	E	G	A	W	A	P	E
Query Conservation
Alig confidence																											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	L	V	G	D	T	D	Q	L	P	P	V	D	A	G	L	P	L	L	A	L	A	Q	A	.	.	A	P	T	I	K	L	T	Q	V	Y	R	Q	A	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N
Template Known Secondary structure								T	T	S				S	S	S											.	.	S														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.			.	.	.	.	.	.	.	490	.	.	.	.	.	.	.																																						.
		1174	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.				.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		H	S	V	T	E	F	S	H	S	Q	E	A	K	L	A	E	A	Q	Q	K	A	M	L	K	G	E	A	F	P	D	V	P	M	T	L	Y	E	A	I	V	R	D	Y	T	G	R	T	P	E	A	R	E	Q	T	L	I	V	T	H	L	N	.	.	.	E	D	R	R	V	L	N	S	M	I	H	D	V	R	E	K
Query Conservation																																																															.	.	.
Alig confidence																																												.	.	.	.	.															.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		P	I	I	Q	A	A	H	G	L	L	H	G	E	A	P	A	W	G	D	K	R	L	N	L	T	E	I	E	P	D	G	G	A	R	R	V	A	L	M	V	R	E	.	.	.	.	.	L	G	G	P	G	A	V	Q	V	L	T	P	M	R	K	G	P	L	G	M	D	H	L	N	Y	H	L	Q	A	L	F	N	P
Template Known Secondary structure												T	T							B	T	T								S	T	T												.	.	.	.	.	T	T	S	G	G	G						S		S	S	S	T	T	S													S
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540						.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		1251	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	L	G	K	E	Q	V	M	V	P	V	L	N	T	A	N	I	R	D	G	E	L	R	R	L	S	T	W	E	T	H	R	D	A	L	V	L	V	D	N	V	Y	H	R	I	A	G	I	S	K	D	D	G	L	I	T	L	Q	D	A	E	G	N	T	R	L	I	S	P	R	E	A	V	A	E	G	V	T
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		574	.	.	.	.
		1331	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	T	P	D	T	I	R	V	G	T	G	D	R	M	R	F	T	K	S	D	R	E	R	G	Y	V	A	N	S	V	W	T	V	T	A	V	S	G	D	S	V	T	L	S	D	G	Q	Q	T	R	E	I	R	P	G	Q	E	Q	A	E	Q	H	I	D	L	A	Y	A	I	T	A	H	G	A	Q	G	A	S	E
Query Conservation
Alig confidence		.	.																																																				.	.	.
Template Conservation		.	.																																																				.	.	.
Template Sequence		.	.	R	I	A	E	G	E	A	R	P	G	D	T	V	V	Q	T	K	N	D	Y	N	N	E	I	F	N	G	T	L	G	M	V	L	K	A	E	G	A	R	L	T	V	D	F	D	G	N	V	V	E	L	.	.	.	T	G	A	E	L	F	N	L	Q	L	G	Y	A	L	T	V	H	R	A	Q	G	S	E	W
Template Known Secondary structure		.	.			S	S	S				T	T							S		B	T	T	T	T	B		T	T										S	S							T	T						.	.	.		G	G	G	G	T	T					S								T	T
Template Predicted Secondary structure		.	.																																																				.	.	.
Template SS confidence
				579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.				630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		1411	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	I	A	L	E	G	T	E	G	N	R	K	L	M	A	G	F	E	S	A	Y	V	A	L	S	R	M	K	Q	H	V	Q	V	Y	T	D	N	R	Q	G	W	T	D	A	I	N	N	A	V	Q	K
Query Conservation
Alig confidence											.	.																												.
Template Conservation											.	.																												.
Template Sequence		G	T	V	L	G	V	L	H	E	.	.	A	H	M	P	M	L	S	R	N	L	V	Y	T	A	L	T	R	A	R	D	R	F	F	S	A	G	S	.	A	S	A	W	Q	I	A	A	A	R	Q	R	E	A
Template Known Secondary structure										G	.	.	G	G	G	G	G												T											.
Template Predicted Secondary structure											.	.																												.
Template SS confidence
		654	.	.	.	.	.	660	.	.			.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.		690	.	.	.	.	.	.	.	.	.	700	.	.	.