Job Description P14565 Confidence 94.35% Date Wed Jan 25 15:20:38 GMT 2012 Rank 377 Aligned Residues 149 % Identity 12% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		981	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	T	S	D	R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	Q	F	R	A	V	M	S	A	V	N	M	L	P	E	S	E	R	P	R	V	V	G	L	G	P	T	H	R	A	V	G	E	M	R	S	A	G	V	D	A	Q	T	L	A	S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	T	P
Query Conservation
Alig confidence																																	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	.	.	.	K	G	A	F	V	D	L	N	C	.	.	.	.	.	.	.	.	.	.	.	.	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T
Template Known Secondary structure				T	S		S								T	T	S	S															.	.	.		S							S	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		T	T	T										S		S	S	S	S
Template Predicted Secondary structure																																	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.													.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		1061	.	.								.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.														.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Predicted Secondary structure					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	F	S	.	.	.	.	.	.	.	N	T	L	F	L	L	D	E	S	S	M	V	G	N	T	D	M	A	R	A	Y	A	L	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	G	G	R	A	V	A	S	G	D	T	D	Q	L	Q	A	I	A	P	G	Q	P	F	R	L	Q	Q	T	R	S	A
Query Conservation					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S
Template Known Secondary structure										T	T	T	S						T	G	G	G	S															S					B	T																S	S								T	T	S	S									T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		1121	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	A	I	M	K	E	I	V	R	Q	T	P	E	L	R	E	A	V	Y	S	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L
Template Known Secondary structure		S								G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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