Job Description P14565 Confidence 96.58% Date Wed Jan 25 15:20:38 GMT 2012 Rank 188 Aligned Residues 145 % Identity 14% Template c3dmqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription Resolution 3.20 Å

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		969	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.					.	.	.	.	1040	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		L	T	S	G	Q	R	A	A	T	R	M	I	L	E	T	S	D	R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	Q	F	R	A	V	M	S	A	V	N	M	L	P	E	S	E	R	P	R	V	V	G	L	G	P	T	H	R	A	V	G	E	M	R	S	.	.	.	.	A	G	V	D	A	Q	T	L	A
Query Conservation																																																																					.	.	.	.
Alig confidence																																												.	.																								.	.	.	.
Template Conservation																																												.	.
Template Sequence		L	I	P	H	Q	L	N	I	A	H	D	V	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	X	I	L	H	Q	Q	L	.	.	L	S	G	A	A	E	R	V	L	I	I	V	P	E	T	L	Q	H	Q	W	L	V	E	X	L	R	R	F	N	L	R	F	A	L	F	D
Template Known Secondary structure																S	S	S									T	T	S															.	.		T	S	S										T	T	T												S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		1045	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.																								.	.	.	.	.	1070	.	.	.	.	.							.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	T	P	D	F	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	F	L	L	D	E	S	S	M	V	.	.	.	.	.	.	G	N	T	D	M	A	R	A	Y	A	L	I	A	A	G	G	G	R	A	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E	Q	L	A	E	H	V	P	G	V	L	L
Template Known Secondary structure											T	T		S	S	S	T	T		S											T	S	T	T	T	T					T	S										S	S					B	T	T	B													T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		1096	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	G	D	T	D	Q	L	Q	A	I	A	P	G	Q	P	F	R	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	A	T	P	E	Q	L	G	X	E	S	H	F	A	R	L	R	L	L
Template Known Secondary structure		S		S	S		S	S	S		S	S		T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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