Job Description P14565 Confidence 97.26% Date Wed Jan 25 15:20:38 GMT 2012 Rank 122 Aligned Residues 107 % Identity 15% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.				470	.	.	.	.	.	.				.	.	.	480	.	.	.								.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure																																												.	.	.								.	.	.								.	.	.	.	.	.	.
Query SS confidence																																												.	.	.								.	.	.								.	.	.	.	.	.	.
Query Sequence		Q	D	R	P	S	L	A	I	V	S	G	Q	G	G	A	A	G	Q	R	E	R	V	A	E	L	V	M	M	A	R	E	Q	G	R	E	V	Q	I	I	A	A	D	.	.	.	R	R	S	Q	M	N	M	.	.	.	K	Q	D	E	R	L	S	.	.	.	.	.	.	.	G	E	L	I	T	G	R	R	Q	L	L
Query Conservation																																												.	.	.								.	.	.								.	.	.	.	.	.	.
Alig confidence																.																												.	.	.								.	.	.								.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		K	E	K	P	T	I	L	L	M	V	G	I	Q	G	.	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V
Template Known Secondary structure			S	S	S									T	T	.	S	S														T	T	T											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure																.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.			.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		E	G	M	A	F	T	P	G	S	T	V	I	V	D	Q	G	E	.	.	K	L	S	L	K	E	T	L	T	L	L	D	G	A	A	R	H	N	V	Q	V	L	I	T
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L
Template Known Secondary structure							T	T		S										S	S																			S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions