Job Description P14565 Confidence 97.20% Date Wed Jan 25 15:20:38 GMT 2012 Rank 129 Aligned Residues 109 % Identity 18% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		971	.	.	.	.	.	.	.	.	980	.	.															.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	Q	R	A	A	T	R	M	I	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	D	R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	Q	F	R	A	V	M	S	A	V	N	M	L	P	E	S	E	R	P	R	V	V	G	L	G	P	T	H	R	A	V	G	E	M	R	S	A
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.																	.	.	.
Template Sequence		R	K	Q	L	A	Q	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	.	.	.	.	.	.	.	G	A	F	F	F	L	I	N	G	P	E	I	M	S	K	L	.	.	.	A
Template Known Secondary structure													T	T	T	T	T		T	T	T	T	T	T													S		T	T	S														.	.	.	.	.	.	.	T								T	T					S		.	.	.	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.
		1037	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.												.	.	.	.	1080	.	.	.	.	.	.	.	.			.	1090	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		G	V	D	A	Q	T	L	A	S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	T	P	D	F	S	N	T	L	F	L	L	D	E	S	S	M	V	.	.	.	.	.	.	.	.	.	.	.	G	N	T	D	M	A	R	A	Y	A	L	I	A	.	.	A	G	G	G	R	A	V	A	S	G
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence													.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation													.	.	.	.	.	.	.	.	.
Template Sequence		G	E	S	E	S	N	L	R	K	A	F	.	.	.	.	.	.	.	.	.	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q	R	A	H	V	I	V	M	A
Template Known Secondary structure		T											.	.	.	.	.	.	.	.	.						T		S							T	G	G	G	T				S	S				S															T	T	T	T	S	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290										.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions