Return to main results Retrieve Phyre Job Id

Job DescriptionP14565
Confidence96.42%DateWed Jan 25 15:20:38 GMT 2012
Rank200Aligned Residues96
% Identity19%Templatec3bxzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   969970.........980.........990.........1000.........1010.........1020.........1030.
Predicted Secondary structure 

















.................
Query SS confidence 






























































. . . . . . . . . . . . . . . . .
Query Sequence  LTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG. . . . . . . . . . . . . . . . .
Query Conservation 

  
  

  



 

   
 
 






 
 

   
       
  
  



 


 .................
Alig confidence 















....





















....
















.................
Template Conservation      
  

       ....
    






   
      ....       

 

  

 
            
   
Template Sequence  HFDVQLLGGMVLNERC. . . . IAEMRTGEGKTLTATLPAYLNA. . . . LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTV
Template Known Secondary structure 

TTTT....

TTS
TT....TSSS
SSTTTT

Template Predicted Secondary structure 




....




....









Template SS confidence 















































































   83......90........ .100.........110.........120 .........130.........140.........150....
 
   1032.......1040.........1050. ........1060.........1070..
Predicted Secondary structure  .............







...















Query SS confidence  . . . . . . . . . . . . .



















. . .




















Query Sequence  . . . . . . . . . . . . . EMRSAGVDAQTLASFLHDTQ. . . LQQRSGETPDFSNTLFLLDES
Query Conservation  ............. 
   

 
 



 
    ...              






Alig confidence  .............



















...




















Template Conservation                     


 
   
    
                  





Template Sequence  GINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEV
Template Known Secondary structure 

TT

SST
SSGGG



S

T
Template Predicted Secondary structure 





















Template SS confidence 
























































   155....160.........170.........180.........190.........200.........210.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions