Job Description P14565 Confidence 97.05% Date Wed Jan 25 15:20:38 GMT 2012 Rank 149 Aligned Residues 90 % Identity 14% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		986	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	Q	F	R	A	V	M	S	A	V	N	M	L	P	E	S	E	R	P	R	V	V	G	L	G	P	T	H	R	A	V	G	E	M	R	S	A	G	V	D	A	Q	T	L	A	S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	T	P	D	F	S	N	T
Query Conservation
Alig confidence																										.	.	.	.	.	.												.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.												.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	.	.	.	N	N	S	T	F	F	S	I	S	S	S	.	.	.	.	.	.	.	.	D	L	V	S	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S							S	T	T	S													T	.	.	.	.	.	.	T	T									S	.	.	.	.	.	.	.	.	T	T	T				T												T		S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.												.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		1066	.	.	.	1070	.	.	.	.	.	.						.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		L	F	L	L	D	E	S	S	M	V	G	.	.	.	.	.	N	T	D	M	A	R	A	Y	A	L	I	A	A	G	G	G	R	A	V	A	S	G
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.
Template Conservation
Template Sequence		I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G
Template Known Secondary structure							S																				T	S	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions