 |
Job Description | P14565 | Confidence | 97.03% | Date | Wed Jan 25 15:20:38 GMT 2012 |
Rank | 150 | Aligned Residues | 98 |
% Identity | 16% | Template | c2vl7A_ |
PDB info |
PDB header:unknown function | Chain: A: PDB Molecule:xpd; |
PDBTitle: structure of s. tokodaii xpd4
|
Resolution | 2.25 Å |
|
 |
  |   |
971 | . | . | . | . | . | . | . | . | 980 | . | . | . | |
|
. | . | . | . | . | . | 990 | . | . | . | . | . | . | . | . | . | 1000 | . | . | . | . | . | . | . | . | . | 1010 | . | . | . | . | . | . | . | . | . | 1020 | . | . | . | . | . | . | . | . | . | 1030 | |
|
|
|
. | . | . | . | . | . | . | . | . | |
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  | . | . | . | . |  |  |  |  |  |
|
|
|
| . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
Query Sequence |   |
S | G | Q | R | A | A | T | R | M | I | L | E | T | . |
. |
S | D | R | F | T | V | V | Q | G | Y | A | G | V | G | K | T | T | Q | F | R | A | V | M | S | A | V | N | M | L | P | E | S | E | R | P | R | V | V | G | L | G | P | T | H | R | A | V | . |
. |
. |
. |
G | E | M | R | S | A | G | V | D | . |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|   |   |
|
|   |   |
|
|
|
| . | . |   |
|
|   |   |   |
|   |
|   |
|
|
|
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|   |
|
|
| . | . | . | . |   |   |
|   |   |   |
|
|   | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|   |
|
|
|   |   |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
Template Sequence |   |
Q | W | Q | A | E | K | L | G | E | A | I | N | A | L | K | H | G | K | T | L | L | L | N | A | K | P | G | L | G | K | T | V | F | V | E | V | L | G | M | Q | L | . |
. |
. |
. |
. |
. |
. |
K | K | K | V | L | I | F | T | R | T | H | S | Q | L | D | S | I | Y | K | N | A | K | L | L | G | L | K | T | G | F | L | R |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|
|  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | Q | T | L | A | S | F | L | H | D | T | Q | L | Q | Q | R | S | G | E | T | P | D | F | S | N | T | L | F | L | L | D | E | S | S | M | V |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|
Template Sequence |   |
A | N | L | K | D | K | D | V | I | A | M | T | Y | P | Y | L | F | Q | K | P | I | R | N | S | V | F | C | N | K | D | D | C | L | K | L | E | D | Y | L | I | V | I | D | E | A | H | N | L |
Template Known Secondary structure |   |
T | T | G | G | G |
| S |  |  |  |  |  | T |  |  |  |  | S |  |  |  |  |  |  |  | S |
| S | S | T | T | S |
|
| G | G | G |  |  |  |  |  | T | T | G | G | G | G |
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|