Job Description P14565 Confidence 97.21% Date Wed Jan 25 15:20:38 GMT 2012 Rank 127 Aligned Residues 106 % Identity 16% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.							.	470	.	.	.	.	.	.	.	.	.	480	.	.	.								.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.																.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.																.	.	.	.	.	.	.
Query Sequence		D	R	P	S	L	A	I	V	S	G	Q	G	G	A	A	G	Q	R	E	R	V	A	E	L	V	M	M	A	R	E	Q	G	R	E	V	Q	I	I	A	A	.	.	.	.	.	.	D	R	R	S	Q	M	N	M	K	Q	D	E	R	L	S	.	.	.	.	.	.	.	G	E	L	I	T	G	R	R	Q	L	L	E
Query Conservation																																										.	.	.	.	.	.																.	.	.	.	.	.	.
Alig confidence															.																											.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		T	K	G	N	V	I	M	F	V	G	L	Q	G	.	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E
Template Known Secondary structure			S	S								S	T	T	.	S	S															T	T											S	S	S														T										S
Template Predicted Secondary structure															.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.			.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		G	M	A	F	T	P	G	S	T	V	I	V	D	Q	G	E	.	.	K	L	S	L	K	E	T	L	T	L	L	D	G	A	A	R	H	N	V	Q	V	L	I	T
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y
Template Known Secondary structure						T	T													T	T																		S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions