Job Description P14565 Confidence 97.14% Date Wed Jan 25 15:20:38 GMT 2012 Rank 138 Aligned Residues 106 % Identity 17% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.							.	470	.	.	.	.	.	.	.	.	.	480	.	.	.								.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.																.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.																.	.	.	.	.	.	.
Query Sequence		D	R	P	S	L	A	I	V	S	G	Q	G	G	A	A	G	Q	R	E	R	V	A	E	L	V	M	M	A	R	E	Q	G	R	E	V	Q	I	I	A	A	.	.	.	.	.	.	D	R	R	S	Q	M	N	M	K	Q	D	E	R	L	S	.	.	.	.	.	.	.	G	E	L	I	T	G	R	R	Q	L	L	E
Query Conservation																																										.	.	.	.	.	.																.	.	.	.	.	.	.
Alig confidence															.																											.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	.	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E
Template Known Secondary structure			S	S									T	T	.	S	S															T	T										S	S																T								T	T
Template Predicted Secondary structure															.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.			.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		G	M	A	F	T	P	G	S	T	V	I	V	D	Q	G	E	.	.	K	L	S	L	K	E	T	L	T	L	L	D	G	A	A	R	H	N	V	Q	V	L	I	T
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L
Template Known Secondary structure							T		S										S	S																			S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions