Job Description P14565 Confidence 97.44% Date Wed Jan 25 15:20:38 GMT 2012 Rank 98 Aligned Residues 240 % Identity 13% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		955	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.					.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000		.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.																				.
Query SS confidence																													.	.	.	.																				.
Query Sequence		M	P	L	M	E	R	V	P	G	E	L	M	E	K	L	T	S	G	Q	R	A	A	T	R	M	I	L	.	.	.	.	E	T	S	D	R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	.	Q	F	R	A	V	M	S	A	V	N	M	L	P	E	S	E	R	P	R	V	V	G	L	G	P	T	H	R	A
Query Conservation																													.	.	.	.																				.
Alig confidence																													.	.	.	.																				.										.	.	.	.	.
Template Conservation																																																														.	.	.	.	.
Template Sequence		R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	.	.	.	.	.	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L
Template Known Secondary structure											T			S																			S	S	S												T	T	T													.	.	.	.	.	T	T	T								S	S
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.						.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
		1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	E	M	R	S	A	G	V	D	A	Q	T	L	A	S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	T	P	D	F	S	N	T	L	F	L	L	D	E	S	S	M	V	G	N	T	D	M	A	R	A	Y	A	L	I	A	A	G	G	G	R	A	V	A	S	G	D	T	D	Q	L	Q	A	I	A	P	G
Query Conservation
Alig confidence								.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.											.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.											.	.																									.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	Q	H	Y	D	.	.	.	.	.	.	N	F	R	D	R	F	.	.	.	.	.	.	.	.	.	.	.	.	A	N	W	P	V	R	I	E	M	I	.	.	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	.	.	.	.	.	.	.	.	.	.	I	G	T	H
Template Known Secondary structure								.	.	.	.	.	.						S	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T							.	.	S	T	T	S														T	T			S			.	.	.	.	.	.	.	.	.	.				T
Template Predicted Secondary structure								.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.											.	.																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		662	.	.	.	.	.							.	.	670	.	.	.													.	.	.	.	.	.	680	.	.	.			.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.											.	.	710	.
		1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	F	R	L	Q	Q	T	R	S	A	A	D	V	A	I	M	K	E	I	V	R	Q	T	P	E	L	R	E	A	V	Y	S	L	I	N	R	D	V	E	R	A	L	S	G	L	E	S	V	K	P	S	Q	V	P	R	Q	E	G	A	W	A	P	E	H	S	V	T	E	F	S	H	S	Q	E	A	K	L	A	E
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T
Template Known Secondary structure						S					S	S								S	G	G	G	S													T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S							S	S											T	T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.														.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
		1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	Q	K	A	M	L	K	G	E	A	F	P	D	V	P	M	T	L	Y	E	A	I	V	R	D	Y	T	G	R	T	P	E	A	R	E	Q	T	L	I	V	T	H	L	N	E	D	R	R	V	L	N	S	M	I	H	D
Query Conservation
Alig confidence																														.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	.	.	.	.	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E
Template Known Secondary structure					B		B																							.	.	.	.	T	T	T										S	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.					.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions