Job Description P14565 Confidence 98.06% Date Wed Jan 25 15:20:38 GMT 2012 Rank 35 Aligned Residues 172 % Identity 13% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		970	.	.	.	.	.	.	.	.	.	980	.																			.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.					.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.
Query Sequence		T	S	G	Q	R	A	A	T	R	M	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	S	D	R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	Q	F	R	A	V	M	S	A	V	N	M	L	P	E	S	E	R	P	R	V	V	G	L	.	.	.	.	G	P	T	H
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.								.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.
Template Sequence		N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	.	.	.	.	.	.	.	G	Y	D	I	L	E	Q	N	A	S	D	V	R	S	K
Template Known Secondary structure															T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	.	.	.	.	.	.	.	T								T	T	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370								.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		1028	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.				.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		R	A	V	G	E	M	R	S	A	G	V	D	A	Q	T	L	A	S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	T	P	D	F	S	N	T	L	F	L	L	D	E	S	S	M	V	G	N	T	.	.	.	D	M	A	R	A	Y	A	L	I	A	A	G	G	G	R	A	V	A	S	G	D	T	D	Q	L	Q
Query Conservation																																																					.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	.	.	.	.	.	.	.	.	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	T	P	L	I	L	I	C	N	E	R	N	L	P
Template Known Secondary structure							T	G	G	G	G	T	T				S	T	T	T	.	.	.	.	.	.	.	.	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T													S	S							S		T	T	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.									.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		1105	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.										.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.
Query Sequence		A	I	A	P	G	Q	P	F	R	L	Q	Q	T	R	S	A	A	D	V	A	I	M	K	E	I	V	R	Q	.	.	.	.	.	.	.	.	.	T	P	E	L	R	E	A	V	Y	S	L	I	N	R	D	V	E	R	A	L	S	G	L	E
Query Conservation																														.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	F	K	L	D	P	N	V	I	D	R	L	I	Q	T	T	R	G	D	I	R	Q	V	I	N	L	L	S
Template Known Secondary structure		T	T	G	G	G	T	T	T	S																									T					T	T									T	T	T										T
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions