Job Description P0ACR0 Confidence 100.00% Date Thu Jan 5 11:18:45 GMT 2012 Rank 3 Aligned Residues 286 % Identity 19% Template c1iz1B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	P	E	T	L	R	T	F	I	A	V	A	E	T	G	S	F	S	K	A	A	E	R	L	C	K	T	T	A	T	I	S	Y	R	I	K	L	L	E	E	N	T	G	V	A	L	F	F	R	T	T	R	S	V	T	L	T	A	A	G	E	H	L	L	S	Q	A	R	D	W	L	S	W	L	E	S	M	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	E	F	R	Q	L	K	Y	F	I	A	V	A	E	A	G	N	M	A	A	A	A	K	R	L	H	V	S	Q	P	P	I	T	R	Q	M	Q	A	L	E	A	D	L	G	V	V	L	L	E	R	S	H	R	G	I	E	L	T	A	A	G	H	A	F	L	E	D	A	R	R	I	L	E	L	A	G	R	S	G	D
Template Known Secondary structure																		S									T	S																	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	Q	Q	V	N	D	G	V	E	R	Q	V	N	I	V	I	N	N	L	L	Y	N	P	Q	A	V	A	Q	L	L	A	W	L	N	E	R	Y	P	F	T	Q	F	H	I	S	R	Q	I	Y	M	G	V	W	D	S	L	L	Y	E	G	F	S	L	A	I	G	V	T	G	T	E	A	L	A	N	T	F	S	L
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		R	S	R	A	A	A	R	G	D	V	G	E	L	S	V	A	Y	F	G	T	.	P	I	Y	R	S	L	P	L	L	L	R	A	F	L	T	S	T	P	T	A	T	V	S	L	T	H	M	T	K	D	E	Q	V	E	G	L	L	A	G	T	I	H	V	G	F	S	R	F	F	P	R	H	P	G	I	E	I	V	N
Template Known Secondary structure									T	S	S									S	G	.	G	G	G	T													S	T	T																				T	S		S					S						T	T
Template Predicted Secondary structure																						.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.
Query Sequence		D	P	L	G	S	V	Q	W	R	F	V	M	A	A	D	H	P	L	A	N	V	E	E	P	L	T	E	A	Q	L	R	R	F	P	A	V	N	I	E	D	S	A	R	.	.	.	.	.	.	T	L	T	K	R	V	A	W	R	L	P	G	Q	K	E	I	I	V	P	D	M	E	T	K	I	A	A	H	L	A	G
Query Conservation																																													.	.	.	.	.	.
Alig confidence																							.	.	.																				.	.	.	.	.	.
Template Conservation																							.	.	.
Template Sequence		I	A	Q	E	D	L	Y	L	A	V	H	R	S	Q	S	G	K	F	G	K	T	.	.	.	C	K	L	A	D	L	R	A	V	E	L	T	L	F	P	R	G	G	R	P	S	F	A	D	E	V	I	G	L	F	K	H	A	G	I	E	P	R	I	A	R	V	V	E	D	A	T	A	A	L	A	L	T	M	A	G
Template Known Secondary structure													G	G	G	G	G	G	T	T	T		.	.	.			G	G	G	G	T	T	S							S	S	S	S	S														T										S	S										T	T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	I	G	F	L	P	K	S	L	C	Q	S	M	I	D	N	Q	Q	L	V	S	R	V	I	P	T	M	R	P	P	S	P	L	S	L	A	W	R	K	F	G	S	G	K	A	V	E	D	I	V	T	L	F	T	Q	R	R
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		A	A	S	S	I	V	P	A	S	V	A	A	I	R	W	.	.	P	D	I	A	F	A	R	I	V	G	T	R	V	K	V	P	I	S	C	I	F	R	K	E	K	Q	P	P	I	L	A	R	F	V	E	H	V	R	R	S	A
Template Known Secondary structure		S												S			.	.	T	T									S	S											S	S	S																T
Template Predicted Secondary structure																	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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