Job Description P76081 Confidence 100.00% Date Thu Jan 5 12:18:22 GMT 2012 Rank 20 Aligned Residues 238 % Identity 23% Template c2rc5D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: refined structure of fnr from leptospira interrogans Resolution 2.43 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.															.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.												.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	T	F	H	S	L	T	V	A	K	V	E	S	E	T	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	T	I	T	F	A	V	P	Q	P	L	Q	E	A	Y	R	F	R	P	G	Q	H	L	T	L	.	.	.	.	.	.	.	.	.	.	.	K	A	S	F	D	G	E	E	L	R	R	C
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.
Template Sequence		S	N	P	Y	K	A	K	V	I	S	N	V	L	L	T	P	E	T	G	T	G	K	R	P	K	K	E	G	E	A	L	V	H	R	I	V	L	A	I	D	H	.	.	.	S	A	Y	P	Y	V	I	G	Q	S	G	G	V	I	P	P	G	E	D	P	E	K	K	A	K	G	L	A	D	V	G	Y	T	V	R	L
Template Known Secondary structure		T	B													S			T	T	S	S	S	S		T	T	S														T	.	.	.	T	T					T	T								S	S	B								T		S			B
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		57	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.											.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure									.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	I	C	R	S	Y	.	.	.	.	L	P	G	E	I	S	V	A	V	K	A	I	.	.	.	.	.	.	.	.	.	.	E	G	G	R	F	S	R	Y	A	R	E	H	I	R	Q	G	M	T	L	E	V	M	V	P	Q	G	H	F	G	Y	Q	P	Q	A	E	R	Q	G	R	Y	L	A	I	A	A	G	S
Query Conservation									.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.													.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																														.
Template Sequence		Y	S	I	A	S	P	S	Y	F	G	M	K	E	D	N	I	E	F	I	I	K	R	D	N	I	Y	D	E	N	G	N	I	Q	F	K	G	V	C	S	N	Y	M	C	D	.	L	K	P	G	D	E	V	T	M	T	G	P	S	G	K	K	F	L	L	P	N	T	D	F	S	G	D	I	M	F	L	A	T	G	T
Template Known Secondary structure				B		S							S	S											B			B	T	T	T	B		S		B									T	.			T	T											S	S	S				S	S		B		S								G	G
Template Predicted Secondary structure																																														.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																																											.
Query SS confidence																				.	.	.																																											.
Query Sequence		G	I	T	P	M	L	A	I	I	A	T	T	L	Q	T	E	P	E	.	.	.	S	Q	F	T	L	I	Y	G	N	R	T	S	Q	S	M	M	F	R	Q	A	L	A	D	L	K	D	K	Y	P	Q	R	L	Q	L	L	C	I	F	S	Q	E	T	.	L	D	S	D	L	L	H	G	R	I	D	G	E	K	L	Q
Query Conservation																				.	.	.																																											.
Alig confidence																				.	.	.																														.													.
Template Conservation																																																				.
Template Sequence		G	I	A	P	F	I	G	M	S	E	E	L	L	E	H	K	L	I	K	F	T	G	N	I	T	L	V	Y	G	A	P	Y	S	D	E	L	V	M	M	D	Y	L	K	G	L	E	S	K	H	K	.	N	F	K	L	I	T	A	I	S	R	E	E	K	N	S	F	D	G	G	R	M	Y	I	S	H	R	V	R	E
Template Known Secondary structure		G	G												T	T		S	S		B		S									S	S	G	G	G			S												S	.	S								T	T	T		B		T	T	T	S	S	B
Template Predicted Secondary structure																																																				.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.										.	.	240	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.																.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.																.	.	.	.	.	.	.	.	.
Query Sequence		S	L	G	A	S	L	I	N	F	R	L	Y	D	E	A	F	I	C	G	P	A	A	M	M	.	.	.	.	.	D	D	A	E	T	A	L	K	A	L	G	M	P	D	K	.	.	.	.	.	.	.	.	.	T	I	H	L	E	R	F
Query Conservation																										.	.	.	.	.																.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	E	A	V	K	K	I	L	N	G	G	G	R	F	Y	I	C	G	G	P	K	G	M	E	K	G	V	I	E	E	I	Q	K	I	S	G	N	T	G	T	Y	E	E	F	K	H	H	L	E	G	A	H	Q	L	F	V	E	T	Y
Template Known Secondary structure		T										T	T								S	S	T	T	T													T			S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions