Job Description P76081 Confidence 100.00% Date Thu Jan 5 12:18:22 GMT 2012 Rank 5 Aligned Residues 235 % Identity 23% Template c2r6hC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis Resolution 2.95 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																														50	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	F	H	S	L	T	V	A	K	V	E	S	E	T	R	D	A	V	T	I	T	F	A	V	P	Q	P	L	Q	E	A	Y	R	F	R	P	G	Q	H	L	T	L	K	A	S	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	E	L
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence		K	E	W	E	C	E	V	L	S	N	K	N	V	S	T	F	I	K	E	F	V	V	K	L	P	E	G	E	T	.	.	X	N	F	K	S	G	S	Y	A	Q	I	K	I	P	K	Y	N	I	R	Y	A	D	Y	D	I	Q	D	R	F	R	G	D	W	D	K	X	D	A	W	S	L	T	C	K	N	E	E	E	T
Template Known Secondary structure														S	S	S	S									S	T	T			.	.					T	T														G	G	G															T	G	G	G							S
Template Predicted Secondary structure																															.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.																.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	C	Y	S	I	C	R	S	Y	L	P	.	G	E	I	S	V	A	V	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	G	R	F	S	R	Y	A	R	E	H	I	R	Q	G	M	T	L	E	V	M	V	P	Q	G	H	F	G	Y	Q	P	Q	A	E	R	Q	G	R	Y	L	A
Query Conservation														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																					.	.	.
Template Conservation																																																		.																					.	.	.
Template Sequence		V	R	A	Y	S	X	A	N	Y	P	A	E	G	N	I	I	T	L	N	V	R	I	A	T	P	P	F	D	R	A	A	N	K	W	K	A	G	I	K	P	G	I	S	S	S	Y	I	F	.	S	L	K	P	G	D	K	V	X	X	S	G	P	Y	G	D	F	H	I	Q	.	.	.	D	T	D	A	E	X	L	Y
Template Known Secondary structure									S		T	T			S															T	T	T	T				T	T												.	T			T	T																.	.	.		S	S	S
Template Predicted Secondary structure																																																		.																					.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																						.																																												.	.
Query SS confidence																						.																																												.	.
Query Sequence		I	A	A	G	S	G	I	T	P	M	L	A	I	I	A	T	T	L	Q	T	.	E	P	E	S	Q	F	T	L	I	Y	G	N	R	T	S	Q	S	M	M	F	R	Q	A	L	A	D	L	K	D	K	Y	P	Q	R	L	Q	L	L	C	I	F	S	Q	.	.	E	T	L	D	S	D	L	L	H	G	R	I	D	G
Query Conservation																						.																																												.	.
Alig confidence																						.																																		.										.	.
Template Conservation																																																								.
Template Sequence		I	G	G	G	A	G	X	A	P	L	R	A	Q	I	L	H	L	F	R	T	L	K	T	G	R	K	V	S	Y	W	Y	G	A	R	S	K	N	E	I	F	Y	E	E	D	F	R	E	I	E	R	E	F	P	N	.	F	K	F	H	I	A	L	S	D	P	Q	P	E	D	N	W	T	G	Y	V	G	F	I	H	Q
Template Known Secondary structure					G	G	G														T	S				S									S	S	G	G	G			S												T	T	.								S	S			G	G	G				S			S
Template Predicted Secondary structure																																																								.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	Q	S	L	G	A	S	L	I	N	F	R	L	Y	D	E	A	F	I	C	G	P	A	A	M	M	D	D	A	E	T	A	L	K	A	L	G	M	P	D	K	T	I	H	L	E	R	F	N
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		V	I	Y	D	N	Y	L	K	D	.	H	D	A	P	E	D	I	E	Y	Y	X	C	G	P	G	P	X	A	N	A	V	K	G	X	L	E	N	L	G	V	P	R	N	X	L	F	F	D	D	F	G
Template Known Secondary structure							T	T	T	T	.		S		G	G	G																							T			G	G	G
Template Predicted Secondary structure											.
Template SS confidence
		363	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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