Job Description P0ACB0 Confidence 96.56% Date Thu Jan 5 11:17:46 GMT 2012 Rank 190 Aligned Residues 121 % Identity 23% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.																											.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.											.	260	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	V	E	N	A	A	M	L	Q	D	K	P	V	L	I	.	.	.	.	.	.	.	.	.	.	F	S	L	E	M	P
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	S	G	Q	T	V	A	L	V	G	N	S	G	C	G	K	S	T	T	V	Q	L	M	Q	R	L	Y	D	P	L	D	G	M	V	S	I	D	G	Q	D	I	R	T	I	N	V	R	Y	L	R	E	I	I	G	V	V	S	Q	E	P	V	L	F	A	T	T	I	A	E	N	I	R	Y	G	R	E	D	V	T
Template Known Secondary structure				T	T									S	S	T	T								T	T	T	S	S			S							T	T			G	G	G	S														S	S					S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.											.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		S	E	Q	I	M	M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	.	.	.	.	.	.	.	.	.	.	Q	L	D	D	E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	D	.	.	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I	A	R
Query Conservation																									.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																.												.	.
Template Conservation																																																		.
Template Sequence		M	D	E	I	E	K	A	V	K	E	A	N	A	Y	D	F	I	M	K	L	P	H	Q	F	D	T	L	V	G	E	R	G	A	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	.	L	V	R	N	P	K	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	A	V	V	Q	A	A	L	D	K
Template Known Secondary structure												T	T		T	T					S	T	T	G	G	G				S	S	S	S		S	S														.						S						B	T	T		S	S
Template Predicted Secondary structure																																																		.
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		333	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	G	G	I	G	L	I	M	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	E	G	R	T	T	I	V	I
Template Known Secondary structure			T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions