Job Description P0ACB0 Confidence 97.55% Date Thu Jan 5 11:17:46 GMT 2012 Rank 75 Aligned Residues 194 % Identity 12% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	M	I	S	V	A	N	E	I	A	E	A	G	F	D	P	Q	G	R	T	S	E	D	L	L	D	L	A	E	S	R	V	F	K	I	A	E	S	R	A	N	K	D	E	G	P	K	N	I	A	D	V	L	D	A	T	V	A	R	I	E	Q	L	F	Q	Q	P	H	D	G	V	T	G	V	N	T	G	Y
Query Conservation
Alig confidence																			.																												.	.																													.	.	.	.	.
Template Conservation																			.																												.	.																													.	.	.	.	.
Template Sequence		E	A	L	I	K	E	L	V	R	D	I	Q	R	A	L	I	Q	.	A	D	V	N	V	R	L	V	L	Q	L	T	R	E	I	Q	R	R	A	L	E	E	K	P	P	A	G	.	.	I	S	K	K	E	H	I	I	K	I	V	Y	E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	.	.	.	.	.
Template Known Secondary structure																			.	T	T																								T	T	.	.																			T	T	S	S							.	.	.	.	.
Template Predicted Secondary structure																			.																												.	.																													.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	N	K	K	T	A	G	L	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L	Q	D	K	P	V	L	I	F	S	L	E	M	P	S	E	Q	I	M	M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	L	D	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	.	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		S	S	S									T	T	S	S														.	T	T	T											S	S	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	.	D	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I	A	R	E	H	G	G	I	G	L	I	M	I	D	Y	L	Q	L	M	R	V	P	A	L	S	D	N	R	T	L	E	I	A	E	I	S	R	S	L	K	A
Query Conservation																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.													.																						.																		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																			.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	.	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	.	.	.	.	.	.	.	.	.	.	A	L	I	E	E	M	K	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.					G	G	G	T							T	T																		T	.	T		S										S	S				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																			.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	E	L	N	V	P	V	V	A	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	N	V	I	H	P	H	E	V	I	L	V
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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