Job Description P0ACB0 Confidence 100.00% Date Thu Jan 5 11:17:46 GMT 2012 Rank 3 Aligned Residues 406 % Identity 37% Template c3bgwD_ PDB info PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase Resolution 3.91 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	E	A	E	Q	S	V	L	G	G	L	M	L	D	N	E	R	W	D	D	V	A	E	R	V	V	A	D	D	F	Y	T	R	P	H	R	H	I	F	T	E	M	A	R	L	Q	E	S	G	S	P	I	D	L	I	T	L	A	E	S	L	E	R	Q	G	Q	L	D	S	V	G	G	F	A	Y	L	A	E	L
Query Conservation
Alig confidence																									.	.																																									.	.
Template Conservation																									.	.																																									.	.
Template Sequence		N	E	Y	A	E	Q	A	V	L	G	S	I	L	T	E	P	E	L	I	K	E	C	P	.	.	L	T	P	E	H	F	S	P	G	K	H	F	N	I	Y	F	T	M	Q	D	L	D	R	K	G	Q	S	V	D	F	T	S	I	A	A	R	V	G	E	K	.	.	L	P	Q	L	G	G	F	G	Y	L	T	E	L
Template Known Secondary structure																S	T	T					S		.	.			G	G	G	S		T	T															T	T				S								S	S	S	S	.	.		G	G	G	T
Template Predicted Secondary structure																									.	.																																									.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	N	T	P	S	A	A	N	I	S	A	Y	A	D	I	V	R	E	R	A	V	V	R	E	M	I	S	V	A	N	E	I	A	E	A	G	F	D	P	Q	G	R	T	S	E	D	L	L	D	L	A	E	S	R	V	F	K	I	A	E	S	R	A	N	K	D	E	G	P	K	N	I	A	D	V	L	D	A	T
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	S	V	A	S	T	T	T	F	K	Q	H	C	Q	T	V	S	E	Y	F	Q	K	R	K	A	I	S	I	A	Q	Q	I	I	E	N	V	N	V	K	P	.	.	.	.	.	.	.	I	Q	E	A	V	S	E	L	M	E	I	E	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A
Template Known Secondary structure						S		T	T	T																				T												T	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																																											.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.																	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	I	E	Q	L	F	Q	Q	P	H	D	G	V	T	G	V	N	T	G	Y	D	D	L	N	K	K	T	A	G	L	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L	Q	D	K	P	V	L	I	F	S	L	E	M	P	S	E	Q	I	M
Query Conservation
Alig confidence																																																														.
Template Conservation																																																														.
Template Sequence		L	V	T	V	Y	E	E	I	E	S	A	D	G	N	I	T	G	V	P	S	G	F	T	E	L	D	R	M	T	Y	G	Y	K	R	R	N	F	V	L	I	A	A	R	P	S	M	G	K	T	A	F	A	L	K	Q	A	K	N	M	S	.	D	N	D	D	V	V	N	L	H	S	L	E	M	G	K	K	E	N	I
Template Known Secondary structure		G									T			S	S			S	B			S									S	S	B		S	S									S	S	S	S														.		T	T								S	S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																					.	.																																																.
Query SS confidence																					.	.																																																.
Query Sequence		M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	.	.	L	D	D	E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	D	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I	A	R	E	H	G	.	G	I	G	L	I	M	I	D	Y	L	Q
Query Conservation																					.	.																																																.
Alig confidence																					.	.																.																																.
Template Conservation																																						.
Template Sequence		K	R	L	I	V	T	A	G	S	I	N	A	Q	K	I	K	A	A	R	R	D	F	A	S	E	D	W	G	K	L	S	M	A	I	G	E	.	I	S	N	S	N	I	N	I	F	D	K	A	G	Q	S	V	N	Y	I	W	S	K	T	R	Q	T	K	R	K	N	P	G	K	R	V	I	V	M	I	D	Y	L	Q
Template Known Secondary structure									S									T	T	G	G	G	T			S												.			T	S								S	S		B															S		S	S									S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	R	V	P	A	L	S	D	N	R	T	L	E	I	A	E	I	S	R	S	L	K	A	L	A	K	E	L	N	V	P	V	V	A	L	S	Q	L	N	R	S	L	E	Q	R	A	D	K	R	P	V	N	S	D	L	R	E	S	G	S	I	E	Q	D	A	D	L	I	M	F	I	Y	R	D	E	V	Y	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	E	P	A	K	A	N	D	S	R	T	N	Q	I	S	Q	I	S	R	D	L	K	K	M	A	R	E	L	D	V	V	V	I	A	L	S	Q	L	S	R	Q	V	E	Q	R	Q	D	K	R	P	M	L	S	D	L	R	E	S	G	Q	L	E	Q	D	A	D	I	I	E	F	L	Y	R	D	D	Y	Y	D	K
Template Known Secondary structure		S	S	B		S		S	S	S																					T											G	G	G	G	G	S	S						G	G	G			S		S							S							B	G	G	G	T		T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	D	L	K	G	I	A	E	I	I	I	G	K	Q	R	N	G	P	I	G	T	V	R	L	T	F	N	G	Q	W	S	R	F	D	N	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	E	S	K	N	I	V	E	V	I	I	A	K	H	R	D	G	P	V	G	T	V	S	L	A	F	I	K	E	Y	G	N	F	V	N	L	E
Template Known Secondary structure		T		S	S	T	T										T	T	S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.