Job Description P0ACB0 Confidence 99.91% Date Thu Jan 5 11:17:46 GMT 2012 Rank 28 Aligned Residues 221 % Identity 17% Template c2zjbB_ PDB info PDB header:recombination Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog; PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant Resolution 3.50 Å

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		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																												.																																					.
Query SS confidence																																												.																																					.
Query Sequence		E	G	P	K	N	I	A	D	V	L	D	A	T	V	A	R	I	E	Q	L	F	Q	Q	P	H	D	G	V	T	G	V	N	T	G	Y	D	D	L	N	K	K	T	.	A	G	L	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L	Q	D	K	.
Query Conservation																																												.																																					.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																		.																																					.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	F	L	T	A	F	E	Y	S	E	K	R	.	.	.	.	.	.	.	.	.	.	.	.	K	M	V	F	H	I	T	T	G	S	Q	E	F	D	K	L	L	G	G	G	I	E	S	M	A	I	T	E	A	F	G	E	F	R	T	G	K	T	Q	L	S	H	T	L	C	V	T	A	Q	L	P	G	A	G	G
Template Known Secondary structure				S											.	.	.	.	.	.	.	.	.	.	.	.	T	T							S						T	T	T	T	S	S			S	S	S								S	S		T												T	T	S		B	T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.													.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
						255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	P	V	L	I	F	S	L	E	M	P	S	E	Q	I	M	M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	L	D	D	E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	D	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	P	G	G	K	I	I	F	I	D	T	E	N	T	F	R	P	D	R	L	R	D	I	A	D	R	F	N	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	A	V	L	D	N	V	L	Y	A	R	A	Y	T	S	E	H	Q	V	E	L	L	D	Y	V	A	A	K	F
Template Known Secondary structure		B										S	S	S											G	G	G	G	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S								S	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.						.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		A	R	E	H	G	G	I	G	L	I	M	I	D	Y	L	Q	L	M	.	.	.	.	.	R	V	P	A	L	S	D	N	R	T	L	E	I	A	E	I	S	R	S	L	K	A	L	A	K	E	L	N	V	P	V	V	A	L	S	Q	L	N	R	S	L	E	Q	R	A	D	K	R	P	V	N	S	D	L	R	E	S
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	E	E	A	G	I	F	K	L	L	I	I	D	S	I	M	A	L	F	R	V	D	F	S	G	R	G	E	L	A	E	R	Q	Q	K	L	A	Q	M	L	S	R	L	Q	K	I	S	E	E	Y	N	V	A	V	F	V	T	N	Q	M	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S		S	S									S	T							S		G	G	G																							T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	I	E	Q	D	A	D	L	I	M	F	I	Y	R	D	E	V	Y	H	E	N	S	D	L	K	G	I	A	E	I	I	I	G	K	Q	R	N	G	P	I	G	T	V	R	L	T	F	N	G	Q
Query Conservation
Alig confidence		.																	.	.	.	.	.	.	.	.
Template Conservation		.																	.	.	.	.	.	.	.	.
Template Sequence		.	I	L	A	H	A	S	T	T	R	I	S	L	R	K	G	R	.	.	.	.	.	.	.	.	G	E	L	R	I	A	K	I	Y	D	S	P	E	M	P	E	N	E	A	T	F	A	I	T	A	G
Template Known Secondary structure		.					S	S	S								S	S	.	.	.	.	.	.	.	.	T	T							S	S		T	T			S	S								T	T
Template Predicted Secondary structure		.																	.	.	.	.	.	.	.	.
Template SS confidence
			292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.									.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions