Job Description P0ACB0 Confidence 100.00% Date Thu Jan 5 11:17:46 GMT 2012 Rank 2 Aligned Residues 423 % Identity 47% Template c2vyeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex Resolution 4.10 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	P	H	S	I	E	A	E	Q	S	V	L	G	G	L	M	L	D	N	E	R	W	D	D	V	A	E	R	V	V	A	D	D	F	Y	T	R	P	H	R	H	I	F	T	E	M	A	R	L	Q	E	S	G	S	P	I	D	L	I	T	L	A	E	S	L	E	R	Q	G	Q	L	D	S	V	G	G	F	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	P	Q	S	I	E	A	E	Q	A	V	L	G	A	V	F	L	D	P	T	A	L	T	L	A	S	E	R	L	I	P	E	D	F	Y	R	A	A	H	Q	K	I	F	H	A	M	L	R	V	A	D	K	G	E	P	V	D	L	V	T	V	T	A	E	L	A	A	L	E	Q	L	E	E	V	G	G	V	S	Y
Template Known Secondary structure				S																	T												G	G	G	S	S	S																T	S																T		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	L	S	K	N	T	P	S	A	A	N	I	S	A	Y	A	D	I	V	R	E	R	A	V	V	R	E	M	I	S	V	A	N	E	I	A	E	A	G	F	D	P	Q	G	R	T	S	E	D	L	L	D	L	A	E	S	R	V	F	K	I	A	E	S	R	A	N	K	D	E	G	P	K	N	I	A	D	V
Query Conservation
Alig confidence																																													.																												.	.
Template Conservation																																													.																												.	.
Template Sequence		L	S	E	L	A	D	S	V	P	T	A	A	N	V	E	Y	Y	A	R	I	V	E	E	K	S	L	L	R	R	L	I	R	T	A	T	S	I	A	Q	D	G	Y	T	.	R	E	D	E	I	D	V	L	L	D	E	A	E	R	K	I	M	E	V	S	Q	R	K	H	S	G	A	.	.	F	K	N	I	K	D	V
Template Known Secondary structure								S		S		G	G	G																															.			S																		T	T	S					.	.
Template Predicted Secondary structure																																													.																												.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	T	V	A	R	I	E	Q	L	F	Q	Q	P	H	D	G	V	T	G	V	N	T	G	Y	D	D	L	N	K	K	T	A	G	L	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L	Q	D	K	P	V	L	I	F	S	L	E	M	P	S
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		L	V	Q	T	Y	D	N	I	E	M	L	H	N	R	N	G	D	I	.	T	G	I	P	T	G	F	T	E	L	D	R	M	T	S	G	F	Q	R	S	D	L	I	I	V	A	A	R	P	S	V	G	K	T	A	F	A	L	N	I	A	Q	N	V	A	T	K	T	N	E	N	V	A	I	F	S	L	E	M	S	A
Template Known Secondary structure																				.		S	B			S									S	S	B		T	T									S	T	T																T	S		S							S	S	S
Template Predicted Secondary structure																				.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	I	M	M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	L	D	D	E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	D	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I	A	R	E	H	G	G	I	G	L	I	M	I	D	Y	L
Query Conservation
Alig confidence																																								.																															.
Template Conservation																																								.																															.
Template Sequence		Q	Q	L	V	M	R	M	L	C	A	E	G	N	I	N	A	Q	N	L	R	T	G	K	L	T	P	E	D	W	G	K	L	T	M	A	M	G	S	.	L	S	N	A	G	I	Y	I	D	D	T	P	S	I	R	V	S	D	I	R	A	K	C	R	R	L	K	Q	E	S	.	G	L	G	M	V	V	I	D	Y	L
Template Known Secondary structure														T								T	T																	.			T	S								S	S		B															T	.										G
Template Predicted Secondary structure																																								.																															.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.
		346	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		Q	L	M	.	R	V	P	A	L	S	D	N	R	T	L	E	I	A	E	I	S	R	S	L	K	A	L	A	K	E	L	N	V	P	V	V	A	L	S	Q	L	N	R	S	L	E	Q	R	A	D	K	R	P	V	N	S	D	L	R	E	S	G	S	I	E	Q	D	A	D	L	I	M	F	I	Y	R	D	E	V	Y
Query Conservation					.
Alig confidence					.																																															.	.																											.	.
Template Conservation																																																				.	.																											.	.
Template Sequence		Q	L	I	Q	G	S	G	R	N	R	E	N	R	Q	Q	E	V	S	E	I	S	R	S	L	K	A	L	A	R	E	L	E	V	P	V	I	A	L	S	Q	L	S	R	S	V	E	Q	R	Q	D	.	.	P	M	M	S	D	L	R	E	S	G	S	I	E	Q	D	A	D	I	V	A	F	L	Y	R	D	D	.	.
Template Known Secondary structure		G	G	S	B			S			S	S																				T	T	S									S						T			.	.											S						S										.	.
Template Predicted Secondary structure																																																				.	.																											.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	N	S	D	L	K	G	I	A	E	I	I	I	G	K	Q	R	N	G	P	I	G	T	V	R	L	T	F	N	G	Q	W	S	R	F	D	N
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		N	K	D	S	E	N	K	N	I	I	E	I	I	I	A	K	Q	R	N	G	.	.	.	.	V	Q	L	A	F	I	K	E	Y	N	K	F	V	N
Template Known Secondary structure					S	S													T	T		.	.	.	.							T	T	T	T
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.					.	.	.	.	.	.	.	430	.	.	.	.	.	.