Job Description P0ACB0 Confidence 97.33% Date Thu Jan 5 11:17:46 GMT 2012 Rank 93 Aligned Residues 196 % Identity 17% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	V	R	E	M	I	S	V	A	N	E	I	A	E	A	G	F	D	P	Q	G	R	T	S	E	D	L	L	D	L	A	E	S	R	V	F	K	I	A	E	S	R	A	N	K	D	E	G	P	K	N	I	A	D	V	L	D	A	T	V	A	R	I	E	Q	L	F	Q	Q	P	H	D	G	V	T	G	V	N	T
Query Conservation
Alig confidence																					.																				.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																					.																				.	.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		K	L	G	E	N	L	N	K	A	L	N	K	L	K	A	A	A	F	V	.	D	K	K	L	I	K	E	V	I	K	D	I	Q	R	A	L	I	Q	A	.	.	.	.	.	.	.	D	V	N	V	K	L	V	L	K	M	S	K	E	I	E	R	R	A	.	.	.	.	.	L	E	E	K	T	P	K	G	L	S	K
Template Known Secondary structure																S	S	S			.		S	S	T	T														T	.	.	.	.	.	.	.											T								.	.	.	.	.	S	S	S		S	S		S	S
Template Predicted Secondary structure																					.																				.	.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70
		210								.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.
Predicted Secondary structure			.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																																											.	.
Query SS confidence			.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																																											.	.
Query Sequence		G	.	.	.	.	.	.	.	Y	D	D	L	N	K	K	T	A	G	L	.	.	.	.	.	.	.	.	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L	Q	D	K	P	V	L	I	F	S	L	E	M	.	.	P	S	E	Q	I	M	M	R	S
Query Conservation			.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																																											.	.
Alig confidence			.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																													.														.	.
Template Conservation																																																									.
Template Sequence		K	E	H	I	I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	.	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q
Template Known Secondary structure																				S								S	S	S										S	S	S	S	T	T												.												S				T	T	G	G	G	S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	L	D	D	E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	D	S	S	G	.	.	L	T	P	T	E	V	R	S	R	A	R	R	I	A	R	E	H	G	G	I	G	L	I	M	I
Query Conservation																																															.	.
Alig confidence										.	.	.																																			.	.
Template Conservation										.	.	.
Template Sequence		L	A	E	K	I	H	V	P	.	.	.	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V
Template Known Secondary structure						S	S			.	.	.					S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S											T	T	S	S	S			S
Template Predicted Secondary structure										.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions