 |
Job Description | P0ACB0 | Confidence | 96.37% | Date | Thu Jan 5 11:17:46 GMT 2012 |
Rank | 216 | Aligned Residues | 109 |
% Identity | 12% | Template | c2rh5B_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:adenylate kinase; |
PDBTitle: structure of apo adenylate kinase from aquifex aeolicus
|
Resolution | 2.48 Å |
|
 |
  |   |
226 | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | |
. | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | I | V | A | A | R | P | S | M | G | K | T | T | F | A | M | N | L | V | E | N | A | A | M | L | Q | D | K | P | V | L | I | F | S | L | E | M | P | S | E | Q | I | M | M | R | S | L | A | S | L | S | R | V | D | Q | T | K | I | R | T | G | . |
Q | L | D | D | E | D | W | A | R | I | S | G | T | M | G | I | L |
Query Conservation |   |
|   |
|
|   |
|   |
|
|   |
|
|
|   |
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |
|   |   |   |   |
|   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|   |   |
|
|
|
|
|
|   |
|   |   |
|
|   |   |
| . | . | . | . |   |   |   |   |
| . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | L | V | F | L | G | P | P | G | A | G | K | G | T | Q | A | K | R | L | A | K | E | K | . |
. |
. |
. |
G | F | V | H | I | . |
. |
. |
. |
. |
. |
S | T | G | D | I | L | R | E | A | V | Q | K | G | T | P | L | G | K | K | A | K | E | Y | M | E | R | G | E | L | V | P | D | D | L | I | I | A | L | I | E | E | V |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|  |  |  | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | |
|
|
|
. | . | . | . | . | |
|
|
|
|
|
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
  |   |
305 | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | K | R | N | I | Y | I | D | D | S | S | G | L | T | P | T | E | V | R | S | R | A | R | R | I | A | R | E | H | G | G | I | G | L | I | M | I | D | Y |
Query Conservation |   |
  |   |   |   |   |
|   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
F | P | K | H | G | N | V | I | F | D | G | F | P | R | T | V | K | Q | A | E | A | L | D | E | M | L | E | K | K | G | L | K | V | D | H | V | L | L | F | E |
Template Known Secondary structure |   |
|
| S | S |
|
|  |  |  |  | S |
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|