Job Description P0ACB0 Confidence 100.00% Date Thu Jan 5 11:17:46 GMT 2012 Rank 1 Aligned Residues 411 % Identity 48% Template c2q6tB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer Resolution 2.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		K	V	P	P	H	S	I	E	A	E	Q	S	V	L	G	G	L	M	L	D	N	E	R	W	D	D	V	A	E	R	V	.	V	A	D	D	F	Y	T	R	P	H	R	H	I	F	T	E	M	A	R	L	Q	E	S	G	S	P	I	D	L	I	T	L	A	E	S	L	E	R	Q	G	Q	L	D	S	V	G	G	F
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		P	I	P	P	H	S	L	E	A	E	Q	S	V	L	G	S	I	L	L	D	S	D	V	M	D	E	V	E	G	L	L	P	S	P	E	A	F	Y	A	E	A	H	R	K	I	Y	A	A	M	Q	A	L	R	S	Q	G	R	P	V	D	L	V	T	L	S	E	E	L	S	R	R	G	Q	L	E	E	V	G	G	T
Template Known Secondary structure		S			S																	G	G	G										S	G	G	G			S																T	T															T	T						T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	L	A	E	L	S	K	N	T	P	S	A	A	N	I	S	A	Y	A	D	I	V	R	E	R	A	V	V	R	E	M	I	S	V	A	N	E	I	A	E	A	G	F	D	P	Q	G	R	T	S	E	D	L	L	D	L	A	E	S	R	V	F	K	I	A	E	S	R	A	N	K	D	E	G	P	K	N	I	A
Query Conservation
Alig confidence																																															.																						.	.	.	.	.	.	.	.
Template Conservation																																															.																						.	.	.	.	.	.	.	.
Template Sequence		A	Y	L	L	Q	L	S	E	A	T	P	T	A	A	Y	A	E	H	Y	A	R	I	V	A	E	K	W	T	L	R	R	L	I	Q	A	A	G	E	A	M	R	L	A	Y	E	.	E	A	G	S	L	D	E	I	L	D	T	A	G	K	K	I	L	E	V	A	L	.	.	.	.	.	.	.	.	A	R	P	M	R
Template Known Secondary structure									T	T		S			T	T																															.			S																	T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.																						.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.									150	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	L	D	A	T	V	A	R	I	E	Q	L	F	Q	Q	P	H	D	G	V	T	G	V	N	T	G	Y	D	D	L	N	K	K	T	A	G	L	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L	Q	D	K	P	V	L	I	F	S	L	E	M
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	V	H	E	T	F	E	H	I	E	A	.	.	.	.	.	.	.	.	.	.	L	V	R	T	G	F	K	E	L	D	Q	L	I	G	T	L	G	P	G	S	L	N	I	I	A	A	R	P	A	M	G	K	T	A	F	A	L	T	I	A	Q	N	A	A	L	K	E	G	V	G	V	G	I	Y	S	L	E	M
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.					S													T	T									T	T	S	S																S										S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.											.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	E	Q	I	M	M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	L	D	D	E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	D	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I	A	R	E	H	G	G	I	G	L	I	M	I	D
Query Conservation
Alig confidence																							.	.	.																	.																															.
Template Conservation																							.	.	.																	.																															.
Template Sequence		P	A	A	Q	L	T	L	R	M	M	C	S	E	A	R	I	D	M	N	R	V	.	.	.	R	L	T	D	R	D	F	S	R	L	V	D	V	A	S	R	.	L	S	E	A	P	I	Y	I	D	D	T	P	D	L	T	L	M	E	V	R	A	R	A	R	R	L	V	S	Q	N	.	Q	V	G	L	I	I	I	D
Template Known Secondary structure															T	T			G	G	G	T	.	.	.																	.		T	T									T	T		B																.
Template Predicted Secondary structure																							.	.	.																	.																															.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	Q	L	M	R	V	P	A	L	S	D	N	R	T	L	E	I	A	E	I	S	R	S	L	K	A	L	A	K	E	L	N	V	P	V	V	A	L	S	Q	L	N	R	S	L	E	Q	R	A	D	K	R	P	V	N	S	D	L	R	E	S	G	S	I	E	Q	D	A	D	L	I	M	F	I	Y	R	D	E	V
Query Conservation
Alig confidence										.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		Y	L	Q	L	M	S	G	P	.	.	.	.	N	R	Q	Q	E	I	A	A	I	S	R	G	L	K	A	L	A	R	E	L	G	I	P	I	I	A	L	S	Q	L	S	R	A	V	E	A	R	P	N	K	R	P	M	L	S	D	L	R	E	S	G	S	I	E	Q	D	A	D	L	V	M	F	I	Y	R	D	E	Y
Template Known Secondary structure			G	G	G		B			.	.	.	.																					T	S										G	G	G	G	S	S	S	S		S			G	G	G	G	G	G	G	S	S						S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.					.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	E	N	S	D	L	K	G	I	A	E	I	I	I	G	K	Q	R	N	G	P	I	G	T	V	R	L	T	F	N	G	Q	W	S	R	F	D	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	N	P	H	S	E	K	A	G	I	A	E	I	I	V	G	K	Q	R	N	G	P	T	G	T	V	E	L	Q	F	H	A	S	H	V	R	F	N	D	L
Template Known Secondary structure				S	S	S	S		T	T										S	S	S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440