Job Description P0ACB0 Confidence 99.92% Date Thu Jan 5 11:17:46 GMT 2012 Rank 27 Aligned Residues 220 % Identity 17% Template c1xp8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s" Resolution 2.50 Å

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		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.										.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		A	D	V	L	D	A	T	V	A	R	I	E	Q	L	F	.	.	.	.	.	.	.	.	.	Q	Q	P	H	D	G	V	T	G	V	N	T	G	Y	D	D	L	N	K	K	T	.	.	A	G	L	Q	P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L
Query Conservation																	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																						.	.																																.
Template Conservation																																																																																.
Template Sequence		S	K	A	I	E	T	A	M	S	Q	I	E	K	A	F	G	K	G	S	I	M	K	L	G	A	E	S	K	L	D	V	Q	V	V	S	T	G	S	L	S	L	D	L	A	L	G	V	G	G	I	P	R	G	R	I	T	E	I	Y	G	P	E	S	G	G	K	T	T	L	A	L	A	I	V	A	Q	A	Q	.	K
Template Known Secondary structure																		T	T	S	S			T	T	S												S								T	S	S	S	S			T	T	S							S	T	T	S	S														.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	K	P	V	L	I	F	S	L	E	M	P	S	E	Q	I	M	M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	L	D	D	E	D	W	A	R	I	S	G	T	M	G	I	L	L	E	K	R	N	I	Y	I	D	D	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I	A
Query Conservation
Alig confidence																		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	G	T	C	A	F	I	D	A	E	H	A	L	D	P	.	.	.	.	V	Y	A	R	A	L	G	V	N	T	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	V	S	Q	P	D	N	G	E	Q	A	L	E	I	M	E	L	L	V
Template Known Secondary structure		T	T								S	S						.	.	.	.						T	T			G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.																													.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		R	E	H	G	G	I	G	L	I	M	I	D	Y	L	Q	L	M	R	V	P	A	L	S	D	N	.	R	T	L	E	I	A	E	I	S	R	S	L	K	A	L	A	K	E	L	N	V	P	V	V	A	L	S	Q	L	N	R	S	L	E	Q	R	A	D	K	R	P	V	N	S	D	L	R	E	S	G	S	I	E	Q
Query Conservation																											.
Alig confidence					.																						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	G	.	A	I	D	V	V	V	V	D	S	V	A	A	L	T	P	R	A	E	I	P	G	L	Q	A	R	L	M	S	Q	A	L	R	K	L	T	A	I	L	S	K	T	G	T	A	A	I	F	I	N	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	R	A	L	K	F
Template Known Secondary structure		T	T	T	.			S							T	T	T				S	T	T																					T	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																			200	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		D	A	D	L	I	M	F	I	Y	R	D	E	V	Y	H	E	N	S	D	L	K	G	I	A	E	I	I	I	G	K	Q	R	N	G	P	I	G	T	.	V	R	L	T	F	N	G	Q	W	S
Query Conservation																																								.
Alig confidence												.	.	.	.																									.
Template Conservation												.	.	.	.
Template Sequence		Y	A	S	V	R	L	D	V	R	K	.	.	.	.	I	G	Q	P	T	V	A	N	T	V	K	I	K	T	V	K	N	K	V	A	A	P	F	K	E	V	E	L	A	L	V	Y	G	K	G
Template Known Secondary structure				S								.	.	.	.		S																S	S	S												T	T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions