Job Description P0ACB0 Confidence 96.12% Date Thu Jan 5 11:17:46 GMT 2012 Rank 250 Aligned Residues 119 % Identity 20% Template c1w4rC_ PDB info PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp Resolution 1.83 Å

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		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	D	L	I	I	V	A	A	R	P	S	M	G	K	T	T	F	A	M	N	L	V	E	N	A	A	M	L	Q	D	K	P	V	L	I	F	S	L	E	M	P	S	E	Q	I	M	M	R	S	L	A	S	L	S	R	V	D	Q	T	K	I	R	T	G	Q	L	D	D	E	D	W	A	R	I	S	G	T	M	G
Query Conservation
Alig confidence																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	Q	I	Q	V	I	L	G	P	M	F	S	G	K	S	T	E	L	M	R	R	V	R	R	.	F	Q	I	A	Q	Y	K	C	L	V	I	K	Y	A	K	D	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	S													.			T	T	T									T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	L	E	K	R	N	I	Y	I	D	D	S	S	G	L	T	P	T	E	V	R	S	R	A	R	R	I	A	R	E	H	G	G	I	G	L	I	M	I	D	Y	L	Q	L	M	R	V	P	A	L	S	D	N	R	T	L	E	I	A	E	I	S	R	S	L	K	A	L	A	K	E	L	N	V	P	V	V	A	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.	.							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.	.							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	A	L	P	A	C	L	L	R	D	V	A	Q	E	A	L	.	.	.	.	.	.	.	G	V	A	V	I	G	I	D	E	G	Q	F	F	.	.	.	.	.	.	.	.	.	.	P	D	I	V	E	F	C	E	A	M	A	N	.	.	.	.	A	G	K	T	V	I	.	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.					S	S	G	G	G	G						.	.	.	.	.	.	.	T		S						S	G	G	G		.	.	.	.	.	.	.	.	.	.	T	T											.	.	.	.	T	T					.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.	.							.
Template SS confidence
													75	.	.	.	.	80	.	.	.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100	.	.											.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120		.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	L	N	R	S	L	E	Q	R	A	D	K	R	P	V	N	S	D	L	R	E	S	G	S	I	E	Q	D	A	D	L	I	M	F	I	Y
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.
Template Sequence		A	A	L	D	G	T	F	Q	R	K	P	.	.	.	.	.	.	.	.	F	G	A	I	L	N	L	V	P	L	A	E	S	V	V	K	L	T
Template Known Secondary structure					S	B		T	T	S	S	B	.	.	.	.	.	.	.	.		T	T	G	G	G	G	G	G	G		S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions