Job Description P03030 Confidence 21.45% Date Thu Jan 5 10:57:57 GMT 2012 Rank 436 Aligned Residues 201 % Identity 12% Template d1pc3a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.16

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.
Query Sequence		E	F	R	Q	G	E	L	S	I	A	C	L	P	V	F	S	Q	S	F	L	P	Q	L	L	Q	P	F	L	A	R	Y	P	D	V	S	L	N	I	V	P	Q	E	S	P	L	L	E	E	W	L	S	A	Q	R	H	D	L	G	L	T	E	T	L	H	T	P	A	G	.	.	.	.	.	.	T	E	R	T	E	L
Query Conservation																																																																						.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	S	S	P	V	T	L	A	E	T	G	S	T	L	L	Y	P	L	F	N	L	W	G	P	A	F	H	E	R	Y	P	N	V	T	I	T	A	Q	G	T	G	S	G	A	G	I	A	Q	A	A	A	G	T	V	N	I	G	A	S	D	A	Y	L	S	E	G	D	M	A	A	H	K	G	L	M	N	I	A	L
Template Known Secondary structure				S	S										T	T	T															S	T	T							B												T	T	S		S					S	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.														180	.	.	.	.	.	.	.	.														.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	L	D	E	V	C	V	L	P	P	G	H	P	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	K	V	L	T	P	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	G	E	N	Y	I	S	L	S	R	T	D	S	Y	R	Q	L	L	D	Q	L	F	T	E	H	Q	V	K
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	S	A	Q	Q	V	N	Y	N	L	P	G	V	S	E	H	L	K	L	N	G	K	V	L	A	A	M	Y	Q	G	T	I	K	T	W	D	D	P	Q	I	A	A	L	N	P	G	V	N	L	P	G	T	A	V	V	P	L	H	R	S	D	G	S	G	D	T	F	L	F	T	Q	Y	L	S	K	Q	D	P	E
Template Known Secondary structure													T	T			S															T	S			B	T	T								S	T	T							B							S	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		218	.	220																	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	E	T	H	S	A	A	S	V	C	A	M	V	R	A	G	.	V	G	I	S	V	V	N	P	L	T	A	L	D	Y	A	A	S	G	L	V	V	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	W	G	K	S	P	G	F	G	T	T	V	D	F	P	A	V	P	G	A	L	G	E	N	G	N	G	G	M	V	T	G	C	A	E	T	P	G	C	V	A	Y	I	G	I	S	F	L	D	Q	A	S	Q	R	G	L	G	E	A	Q	L	G	N	S	S	G	N	F	L	L	P	D	A	Q	S	I	Q	A	A	A
Template Known Secondary structure		T	T	T	T	T	T			S	S	S							T	T																	S	T	T							G	G	G							T	T									T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
																							261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	I	A	V	P	F	T	V	S	L	I	R	P	L	H	R	P	S	.	.	.	S	A	L	V	Q	A	F	S	G	H	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		A	G	F	A	S	K	T	P	A	N	Q	A	I	S	M	I	D	G	P	A	P	D	G	Y	P	I	I	N	Y	E	Y	A	I	V	N	N	R	Q	K	D	A	A	T	A	Q	T	L	Q	A	F	L	H	W	A
Template Known Secondary structure		T	T	T	T	T				T	T						T	T		S		T	T			S											S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions