Job Description P03030 Confidence 42.66% Date Thu Jan 5 10:57:57 GMT 2012 Rank 355 Aligned Residues 180 % Identity 6% Template c3r39A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica Resolution 2.14 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		D	V	S	L	N	I	V	P	Q	E	S	P	L	L	E	E	W	L	S	A	Q	R	H	D	L	G	L	.	T	E	T	L	H	T	P	A	G	T	E	R	T	E	L	L	S	L	D	E	V	C	V	L	P	P	G	H	P	L	A	V	K	K	V	L	T	P	D	D	F	Q	G	E	N	Y	I	S	L	S	R	T
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F	S	G	I	S	I	T	D	K	R	K	K	V	I	D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K	Y	S	I	G	Y	P	R	G	M
Template Known Secondary structure		T																				T	S		S														T	T							S											T	T	S					S	S	G	G	G	G	G	G	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																									.															.	.
Query SS confidence																																									.															.	.
Query Sequence		D	S	Y	R	Q	L	L	D	Q	L	F	T	E	H	Q	V	K	R	R	M	I	V	E	T	H	S	A	A	S	V	C	A	M	V	R	A	G	V	G	.	I	S	V	V	N	P	L	T	A	L	D	Y	A	A	.	.	S	G	L	V	V	R	R	F	S	I	A	V	P	F	T	V	S	L	I	R	P	L	H	R
Query Conservation																																									.															.	.
Alig confidence																																									.															.	.
Template Conservation
Template Sequence		A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G	N	L	D	L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	P	I	E	S	R	Y	V	F	K	N	V	D	Q	L	G	I	A	F	K	K	G	S
Template Known Secondary structure		T									T	G	G	G	T	S			G	G	G					S	S										T	T	S		S															T	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		P	S	S	A	L	V	Q	A	F	S	G	H	L	Q	A	.	G	L	P	K	L	V	T	S	L
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		P	V	R	D	D	F	N	L	W	L	K	E	Q	G	P	Q	K	I	S	G	I	V	D	S	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions