Job Description P03030 Confidence 44.54% Date Thu Jan 5 10:57:57 GMT 2012 Rank 345 Aligned Residues 203 % Identity 11% Template c3hn0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution Resolution 1.75 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	S	I	A	C	L	P	V	F	S	Q	S	F	L	P	Q	L	L	Q	P	F	L	A	R	Y	P	D	V	S	L	N	I	V	P	Q	E	S	P	L	L	E	E	W	L	S	A	Q	R	H	D	L	G	L	T	E	T	L	H	T	P	A	G	T	E	R	T	E	L	L	S	L	D	E	V	C	V	L	P	P
Query Conservation
Alig confidence																																																																.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		V	I	K	V	S	V	L	R	G	P	S	V	I	A	F	A	D	W	L	E	N	P	P	I	I	D	N	K	K	V	Q	V	K	V	V	D	S	P	D	L	A	Q	A	L	L	I	K	Q	E	T	D	I	A	V	L	P	X	I	N	A	A	N	.	.	.	.	.	.	L	Y	N	K	G	I	K	I	K	L	A	G
Template Known Secondary structure									S	S	T					T						S					T	T									S											T	T			S												.	.	.	.	.	.				T	T		S
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		G	H	P	L	A	V	K	K	V	L	T	P	D	D	F	Q	G	E	N	Y	I	S	L	S	R	T	D	S	Y	R	Q	L	L	D	Q	L	F	T	E	H	Q	V	K	R	R	M	I	V	E	T	H	S	A	A	S	V	C	A	M	V	R	A	G	.	.	V	G	I	S	V	V	N	P	L	T	A	L	D	Y	A
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		C	P	I	W	G	T	L	Y	L	V	E	K	T	P	L	K	E	P	A	L	Y	V	F	G	N	G	T	T	P	D	I	L	T	R	Y	Y	L	G	R	Q	R	L	D	Y	P	L	N	Y	A	F	N	T	A	G	E	I	T	Q	G	I	L	A	G	K	V	N	R	A	V	L	G	E	P	F	L	S	I	A	L	R
Template Known Secondary structure														S	S			S						S	S	T	T	S														T								S			S											T	S		S						T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		A	S	G	L	V	V	R	R	F	S	I	A	V	P	F	T	.	.	.	.	.	.	V	S	L	I	R	P	L	H	R	P	S	S	A	L	V	Q	A	F	S	G	H	L	Q	A	G	L	P	K	L	V	T	S	L	D	A
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	S	S	L	R	I	T	A	D	L	N	H	L	T	D	N	D	T	L	G	F	A	Q	T	A	V	V	Y	T	P	T	X	E	K	Y	R	I	A	F	E	D	A	L	R	A	S	C	Q	K	A	V	R	Y	P	K	E
Template Known Secondary structure				T	T										S	S	T	T		S	S											G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions