Job Description P03030 Confidence 42.18% Date Thu Jan 5 10:57:57 GMT 2012 Rank 356 Aligned Residues 212 % Identity 16% Template c2x26A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli Resolution 1.75 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																								.	.	.	.
Query SS confidence																																					.																								.	.	.	.
Query Sequence		E	L	S	I	A	C	L	P	V	F	S	Q	S	F	L	P	Q	L	L	Q	P	F	L	A	R	Y	P	D	V	S	L	N	I	V	P	.	Q	E	S	P	L	L	E	E	W	L	S	A	Q	R	H	D	L	G	L	T	E	T	L	.	.	.	.	H	T	P	A	G	T	E	R	T	E	L	L	S	L	D	E	V
Query Conservation																																					.																								.	.	.	.
Alig confidence																																					.																								.	.	.	.
Template Conservation
Template Sequence		A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K
Template Known Secondary structure									T	T										T	T							T	T	S								S	S											T	S		S						S									T	T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		C	V	L	P	P	G	H	P	L	A	V	K	K	V	L	T	P	D	D	F	Q	G	E	N	Y	I	S	L	S	R	T	D	S	Y	R	Q	L	L	D	Q	L	F	T	E	H	Q	V	K	R	R	M	I	V	E	T	H	S	A	A	S	V	C	A	M	V	R	A	G	.	.	V	G	I	S	V	V	N	P	L	T
Query Conservation																																																																						.	.
Alig confidence																																																																						.	.
Template Conservation
Template Sequence		P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y
Template Known Secondary structure		G	G	G							T	T		S			S	G	G	G	G	T	T	S						T	T	S													T	T			G	G	G	S																T	T	S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		A	L	D	Y	A	A	S	G	L	V	V	R	R	F	S	I	A	V	P	F	T	V	S	L	I	R	P	L	H	R	.	.	.	P	S	S	A	L	V	Q	A	F	S	G	H	L	Q	A	G	L	P	K	L	V	T	S	L	D	A	I	L	S
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		S	A	A	L	L	Q	G	G	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A
Template Known Secondary structure								S	S							S	T	T	S																	T																					T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions