Job Description P03030 Confidence 41.01% Date Thu Jan 5 10:57:57 GMT 2012 Rank 359 Aligned Residues 181 % Identity 10% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	P	Q	L	L	Q	P	F	L	A	R	Y	P	D	V	S	L	N	I	V	P	Q	E	S	P	L	L	E	E	W	L	S	A	Q	R	H	D	L	G	L	T	E	T	L	H	T	P	A	G	T	E	R	T	E	L	L	S	L	D	E	V	C	V	L	P	P	G	H	P	L	A	V	K	K	V	L	T	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	V	E	L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	X	E	F	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q	X	E	K	S	K	E	R	E	K	K	F	L	F	N	K	V	A	Y	N	H	F	P	L	K	I	T	V	L	Q	N	N	D	T	I	R	G	I
Template Known Secondary structure															T	T										G	G	G						G	G	G	S		S				S																S	S													T	T			S		S	S	G
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																						.															.	.
Query SS confidence																																																						.															.	.
Query Sequence		D	F	Q	G	E	N	Y	I	S	L	S	R	T	D	S	Y	R	Q	L	L	D	Q	L	F	T	E	H	Q	V	K	R	R	M	I	V	E	T	H	S	A	A	S	V	C	A	M	V	R	A	G	V	G	.	I	S	V	V	N	P	L	T	A	L	D	Y	A	A	.	.	S	G	L	V	V	R	R	F	S	I	A
Query Conservation																																																						.															.	.
Alig confidence																												.	.	.	.	.	.																					.															.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		E	D	L	K	G	K	R	V	I	T	S	A	G	A	L	V	L	K	K	W	N	E	D	N	G	R	.	.	.	.	.	.	P	F	E	I	A	Y	E	A	N	E	T	A	N	Q	L	K	S	G	R	A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	V	G	N	V	L
Template Known Secondary structure		G	G		T	T																	T	T	T	T		.	.	.	.	.	.		S																S	S		S																	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	F	T	V	S	L	I	R	P	L	H	R	P	S	S	A	L	V	Q	A	F	S	G	H	L	Q	A	G	L	P	K	L	V	T	S
Query Conservation
Alig confidence															.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		S	N	A	K	V	Y	F	X	F	N	K	N	E	.	.	.	.	.	.	Q	T	L	S	D	D	I	D	K	A	L	Q	E	I	I	D	D
Template Known Secondary structure												G	G	G	.	.	.	.	.	.																	T
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions