Job Description P0AG67 Confidence 24.14% Date Thu Jan 5 11:28:15 GMT 2012 Rank 100 Aligned Residues 196 % Identity 8% Template c3kygB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein vca0042; PDBTitle: crystal structure of vca0042 (l135r) complexed with c-di-gmp Resolution 2.10 Å

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		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		K	Q	C	K	A	N	P	W	Q	Q	F	A	E	T	H	N	K	G	D	R	V	E	G	K	I	K	S	I	T	D	F	G	I	F	I	G	L	D	G	G	I	D	G	L	V	H	L	S	D	I	S	W	N	V	A	G	E	E	A	V	R	.	.	.	E	Y	K	K	G	D	E	I	A	A	V	V	L	Q	V	D
Query Conservation																																																															.	.	.
Alig confidence																								.	.																																						.	.	.
Template Conservation																								.	.
Template Sequence		K	T	V	S	T	I	N	S	T	D	A	L	A	M	V	E	H	S	S	E	L	T	.	.	L	S	I	T	T	P	V	G	T	K	F	V	C	R	T	P	F	I	G	T	H	T	D	K	F	L	L	V	E	M	P	K	I	S	A	D	D	L	Q	Y	F	F	Q	E	G	F	W	M	N	I	R	A	I	S	P	R
Template Known Secondary structure															T	S		T	T					.	.						T	T															T	T	T																				T	T											S
Template Predicted Secondary structure																								.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.			.	.	.	.	.	440	.	.	.	.	.	.	.	.	.																									450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	R	E	R	I	S	L	G	V	K	.	.	Q	L	A	E	D	P	F	N	N	W	V	A	L	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	A	I	V	T	G	K	V	T	A	V	D	A	K	G	A	T	V	E	L	A	D	G	V	E	G	Y
Query Conservation													.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																																																											.
Template Sequence		G	E	G	A	L	I	H	F	R	S	Q	L	M	H	I	L	Q	E	P	V	P	M	A	F	L	S	I	P	N	T	M	Q	V	S	Q	R	R	K	E	P	R	F	E	L	N	L	A	G	K	V	L	F	D	E	H	R	G	D	C	E	L	R	D	L	S	R	S	G	C	R	F	I	T	.	P	P	L	G	K	T
Template Known Secondary structure		T	T																S	S	S									S							S		S	S														T	T												S	S							.		T	T	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.		.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		L	R	A	S	E	A	S	R	D	R	V	E	D	A	T	L	V	L	S	V	G	D	E	V	E	A	K	F	T	G	V	D	R	K	N	R	A	I	S	L	S	V	R	A	K	D	.	E	A	D	E	K	D	A	I	A	T	V	N	K	Q	E	D	A	N	F	S	N	N
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		Y	Q	V	G	D	L	V	A	L	E	I	F	S	D	L	R	G	T	K	T	F	P	P	L	T	G	K	I	C	N	L	Q	R	S	L	H	H	A	R	Y	G	L	E	F	N	E	E	G	R	N	N	A	K	N	L	L	A	Q	L	K	F	N	G	T	K	L	T	L	N
Template Known Secondary structure				T	T											T	T						S													S	S																						T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions